Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NST56_RS00580 Genome accession   NZ_CP150195
Coordinates   105592..106968 (+) Length   458 a.a.
NCBI ID   WP_010332751.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0560     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 100592..111968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST56_RS00560 (NST56_00560) ctsR 100945..101409 (+) 465 WP_010332747.1 transcriptional regulator CtsR -
  NST56_RS00565 (NST56_00565) - 101423..101980 (+) 558 WP_326218816.1 UvrB/UvrC motif-containing protein -
  NST56_RS00570 (NST56_00570) - 101980..103071 (+) 1092 WP_168746771.1 protein arginine kinase -
  NST56_RS00575 (NST56_00575) clpC 103068..105500 (+) 2433 WP_010332750.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  NST56_RS00580 (NST56_00580) radA 105592..106968 (+) 1377 WP_010332751.1 DNA repair protein RadA Machinery gene
  NST56_RS00585 (NST56_00585) disA 106972..108054 (+) 1083 WP_003242042.1 DNA integrity scanning diadenylate cyclase DisA -
  NST56_RS00590 (NST56_00590) - 108174..109274 (+) 1101 WP_168746772.1 PIN/TRAM domain-containing protein -
  NST56_RS00595 (NST56_00595) ispD 109289..109987 (+) 699 WP_010332753.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  NST56_RS00600 (NST56_00600) ispF 109980..110456 (+) 477 WP_010332754.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49492.00 Da        Isoelectric Point: 8.4759

>NTDB_id=965811 NST56_RS00580 WP_010332751.1 105592..106968(+) (radA) [Bacillus sp. FSL R5-0560]
MAKTKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPANRRAAFSHSVQTVQKPSPITSIETSEEPRVKTQLGEF
NRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLSGSSRHVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYIS
SAIEEMNPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAALMKIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGSSGSSITASMEGTRPILVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFRDTPPNPADCFIGEVGLT
GEVRRVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKPKGIEVIGVANVSEALRTSLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=965811 NST56_RS00580 WP_010332751.1 105592..106968(+) (radA) [Bacillus sp. FSL R5-0560]
ATGGCTAAAACAAAATCCAAATTCATCTGCCAATCCTGCGGCTACGAGTCTCCAAAATGGATGGGGAAATGTCCGGGCTG
CGGTGCTTGGAATACAATGGTGGAAGAAATGATTAAAAAAGCACCGGCCAATCGGAGAGCGGCTTTTTCTCATTCTGTTC
AAACCGTACAGAAACCTTCCCCCATAACATCAATCGAAACATCAGAAGAACCTCGGGTTAAAACACAGCTCGGCGAGTTT
AACAGAGTGCTCGGAGGCGGAGTGGTAAAGGGATCACTTGTTTTAATTGGCGGGGACCCCGGTATCGGGAAATCGACCTT
ACTACTGCAAGTATCCGCTCAGCTATCTGGTTCATCGCGTCATGTTCTATACATTTCAGGAGAAGAATCGGTAAAACAAA
CGAAATTAAGAGCAGACCGTCTGGGCATAAATAATCCCTCACTGCATGTTTTATCCGAAACCGATATGGAGTATATTTCG
TCTGCTATAGAAGAGATGAATCCAGCGTTTGTCGTTGTCGACTCGATTCAAACGGTTTATCAAAGTGATATCACATCGGC
TCCCGGCAGTGTATCACAAGTAAGAGAATGTACAGCCGCGCTGATGAAAATTGCAAAAACAAAAGGTATTCCGATATTTA
TTGTAGGTCACGTAACGAAAGAAGGGTCCATCGCGGGGCCGAGACTGCTGGAGCATATGGTTGACACTGTTTTATACTTT
GAAGGAGAACGTCACCATACTTTCCGAATCTTACGGGCTGTAAAAAACCGTTTTGGTTCTACAAACGAAATGGGTATTTT
TGAAATGCGGGAAGAAGGGCTCACTGAGGTACTGAATCCTTCAGAGATCTTCTTAGAAGAGCGTTCGGCGGGATCTTCGG
GGTCGAGCATAACGGCTTCTATGGAAGGTACAAGGCCTATTCTTGTTGAAATTCAGGCACTCATCTCGCCAACGAGCTTT
GGCAATCCGCGGCGCATGGCAACAGGGATAGATCATAACAGGGTGTCACTGTTAATGGCTGTATTAGAAAAAAGAGTAGG
GCTGCTGCTGCAAAATCAGGATGCATATTTGAAGGTAGCGGGCGGCGTCAAACTAGATGAACCTGCGATTGATCTTGCTA
TAGCGGTAAGTATCGCATCGAGCTTTAGAGATACACCTCCAAATCCTGCAGATTGCTTTATAGGAGAAGTGGGATTAACC
GGAGAAGTCCGCCGGGTATCAAGAATTGAACAGCGTGTAAAAGAAGCGGCAAAGCTTGGCTTTAAACGCATGATCATACC
TGCGGCAAATCTGGATGGATGGACGAAACCAAAAGGGATTGAGGTCATCGGAGTAGCAAATGTTTCAGAGGCACTTCGTA
CTTCATTAGGAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

98.035

100

0.98
  radA Streptococcus pneumoniae Rx1

63.576

98.908

0.629
  radA Streptococcus pneumoniae D39

63.576

98.908

0.629
  radA Streptococcus pneumoniae R6

63.576

98.908

0.629
  radA Streptococcus pneumoniae TIGR4

63.576

98.908

0.629
  radA Streptococcus mitis NCTC 12261

63.576

98.908

0.629
  radA Streptococcus mitis SK321

63.355

98.908

0.627

Multiple sequence alignment