Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   NST56_RS00020 Genome accession   NZ_CP150195
Coordinates   3035..4147 (+) Length   370 a.a.
NCBI ID   WP_339179201.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0560     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST56_RS00005 (NST56_00005) dnaA 1..1341 (+) 1341 WP_010332673.1 chromosomal replication initiator protein DnaA -
  NST56_RS00010 (NST56_00010) dnaN 1536..2672 (+) 1137 WP_010332674.1 DNA polymerase III subunit beta -
  NST56_RS00015 (NST56_00015) rlbA 2804..3019 (+) 216 WP_268528635.1 ribosome maturation protein RlbA -
  NST56_RS00020 (NST56_00020) recF 3035..4147 (+) 1113 WP_339179201.1 DNA replication/repair protein RecF Machinery gene
  NST56_RS00025 (NST56_00025) remB 4165..4410 (+) 246 WP_010332676.1 extracellular matrix regulator RemB -
  NST56_RS00030 (NST56_00030) gyrB 4466..6382 (+) 1917 WP_010332677.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  NST56_RS00035 (NST56_00035) gyrA 6594..9065 (+) 2472 WP_010332678.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42406.48 Da        Isoelectric Point: 7.3662

>NTDB_id=965807 NST56_RS00020 WP_339179201.1 3035..4147(+) (recF) [Bacillus sp. FSL R5-0560]
MHIQNLELTSYRNYEHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKKNGV
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLYDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLIEVAAKVVVKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALEVSDPEDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=965807 NST56_RS00020 WP_339179201.1 3035..4147(+) (recF) [Bacillus sp. FSL R5-0560]
TTGCATATCCAGAATTTAGAACTGACATCTTACCGCAACTACGAACACGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATTGGAGAAAATGCCCAGGGGAAAACAAACCTCATGGAAGCGATCTATGTCTTGTCCATGGCAAAATCGCATCGGA
CTTCAAATGACAAAGAACTTATCCGATGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGAAAAACGGAGTG
ATTCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATCGAACAGCAAAAGCTCAGCCAGTA
TGTCGGTGCCCTCAACACCATCATGTTTGCGCCGGAAGATTTAAACCTTGTAAAGGGAAGCCCTCAAGTGAGACGGAGGT
TTCTTGACATGGAAATTGGCCAAGTTTCTCCCGTCTACCTGTATGACCTTTCTCTTTACCAGAAGATTCTTTCCCAGCGA
AATCACTTTCTGAAGCAGTTGCAAACAAGAAAACAAACTGACAGAACAATGCTTGATGTTCTGACTGATCAGCTTATTGA
AGTTGCCGCAAAAGTCGTCGTAAAACGTCTGCAATTCACGGCACAGCTCGAAAAATGGGCGCAGCCTATCCATTCGGGCA
TCTCAAGAGGGCTTGAGGAACTAACGCTGAAGTACCATACGGCTCTTGAGGTATCAGATCCTGAAGACTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGAGCGTGGCGTCACGCTGTCTGGACCTCATCG
GGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTACGGTTCTCAAGGACAGCAGCGGACGACGGCATTAT
CCCTTAAGCTGGCTGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTGCTGAGT
GAGCTGGATGATTATCGCCAATCGCACTTGCTTCATACCATCCAGGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
CGATGGCATTGATCACGAAACCTTACGGCAAGCAGGAATGTTCCGTGTGCAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

97.568

100

0.976

Multiple sequence alignment