Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NST29_RS05480 Genome accession   NZ_CP150194
Coordinates   1089999..1092356 (+) Length   785 a.a.
NCBI ID   WP_033018052.1    Uniprot ID   -
Organism   Geobacillus sp. FSL W8-0026     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1084999..1097356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST29_RS05455 (NST29_05455) - 1085658..1086308 (+) 651 WP_033018059.1 YitT family protein -
  NST29_RS05460 (NST29_05460) - 1086319..1086735 (+) 417 WP_033018058.1 Rrf2 family transcriptional regulator -
  NST29_RS05465 (NST29_05465) - 1086928..1088070 (+) 1143 WP_033018055.1 cysteine desulfurase family protein -
  NST29_RS05470 (NST29_05470) mnmA 1088087..1089202 (+) 1116 WP_033018054.1 tRNA 2-thiouridine(34) synthase MnmA -
  NST29_RS05475 (NST29_05475) - 1089320..1089982 (+) 663 WP_033018053.1 tetratricopeptide repeat protein -
  NST29_RS05480 (NST29_05480) recD2 1089999..1092356 (+) 2358 WP_033018052.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NST29_RS05485 (NST29_05485) - 1092382..1092855 (+) 474 WP_033018051.1 PRC-barrel domain-containing protein -
  NST29_RS05490 (NST29_05490) - 1092871..1093062 (+) 192 WP_033018049.1 hypothetical protein -
  NST29_RS05495 (NST29_05495) - 1093074..1093208 (+) 135 WP_081897240.1 YrzQ family protein -
  NST29_RS05500 (NST29_05500) - 1093327..1094388 (+) 1062 WP_033018048.1 AI-2E family transporter -
  NST29_RS05505 (NST29_05505) alaS 1094707..1097343 (+) 2637 WP_033018046.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 86122.81 Da        Isoelectric Point: 5.3427

>NTDB_id=965775 NST29_RS05480 WP_033018052.1 1089999..1092356(+) (recD2) [Geobacillus sp. FSL W8-0026]
MQEQQTLAIEGCTFIKGTCISVIFHNEETLYTVVRIRVEETNEAPVEEEVIVTGHFPRISEGDVYVFYGQFRHHPRFGRQ
YAASQFRKQLPNTKEGIIQYLSSGLFKGIGKKTAAAIAEALGEQAIAVILRDPAALERIPKLSKQKAKQLYETLRAHEGL
EQTMITLAQLGFGPQLAMKIYQAYGEEAIEIIQANPYQLVEDIEGIGFGRADELGRQLGISGSHPARLRAASLFVLEQVC
LQEGHVYMAEEELVGRIAELLDGRPSGAVDGQAIQRTLLMLSEEGKLVVEQGRCYLPSLYFAEKGIVSNVKRLLRQTAVP
FAESEFLLALGALEERLGMQYAPQQKEAIQRALSSPLFILTGGPGTGKTTVIKGIVELFAALNGLSLDPARYQQGEPFPV
VLAAPTGRAAKRMSEATGLPAATIHRLLGWNGVEGFSRDEHEPLAGKLLVIDEMSMVDTWLANQLFKAVPNGMQVVLVGD
EDQLPSVGPGQVLKDLLESGVVPSVRLTDVYRQAEGSSIIELAHEVKRGAVPPDLTAPKADRSFIRCRAGQVVDVVRQIA
DNARKKGFSVKDIQVLAPMYRGPAGIDRLNKALQELFNPPSAGKRELAAGEVVYRVGDKVLQLVNQPEDNVFNGDIGEVV
AIFYAKENTDKQDLLVVSFDGVEVTYTRQELSQITHAYCCSVHKAQGSEFPIVILPVVKSYYRMLKRNLLYTAVTRSKQF
LILCGEEEAFRAGVAKQSDGARRTALAEKLTAAMAPVVEVELPLEDANVGMENVTPYDFMSDESS

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=965775 NST29_RS05480 WP_033018052.1 1089999..1092356(+) (recD2) [Geobacillus sp. FSL W8-0026]
TTGCAAGAGCAGCAAACGCTGGCCATTGAGGGGTGCACCTTTATTAAAGGAACGTGCATATCCGTCATTTTCCATAACGA
AGAAACGCTTTACACCGTTGTCCGCATTCGCGTTGAGGAAACGAACGAAGCGCCGGTTGAAGAGGAAGTGATCGTCACCG
GCCATTTCCCGCGGATCAGCGAGGGAGACGTTTATGTGTTTTATGGTCAATTCCGCCATCATCCGCGCTTTGGCCGCCAG
TATGCGGCGAGCCAGTTCCGCAAACAGCTTCCCAACACGAAAGAAGGAATCATTCAGTATTTATCAAGCGGTTTGTTTAA
AGGGATCGGCAAAAAAACGGCTGCGGCCATCGCCGAAGCGCTCGGCGAGCAGGCGATTGCCGTGATTTTGCGCGATCCAG
CGGCGCTCGAGCGCATTCCGAAACTGTCCAAACAAAAGGCCAAGCAGCTGTATGAAACGCTCCGCGCCCACGAAGGGCTT
GAGCAGACGATGATCACCCTCGCTCAGCTCGGCTTCGGCCCCCAGCTGGCCATGAAAATTTACCAAGCGTACGGCGAGGA
AGCGATCGAAATCATCCAAGCCAATCCGTACCAGCTCGTCGAAGACATTGAGGGGATCGGGTTCGGTCGCGCCGATGAGC
TTGGGCGGCAGCTCGGCATTTCCGGAAGCCACCCGGCTCGGCTGCGCGCCGCTTCCTTGTTTGTCCTCGAGCAAGTTTGC
CTGCAGGAAGGGCATGTGTACATGGCCGAGGAAGAGCTGGTCGGCCGCATTGCTGAACTGCTGGATGGCCGGCCGAGCGG
GGCGGTCGACGGACAAGCCATTCAACGGACGCTGCTGATGTTGAGTGAAGAAGGAAAACTGGTCGTTGAGCAAGGCCGTT
GTTATCTCCCGTCGCTTTACTTTGCCGAAAAAGGCATCGTTTCCAACGTCAAGCGGCTGCTCCGGCAAACGGCGGTGCCG
TTTGCGGAATCGGAGTTTTTGCTGGCGCTCGGGGCGCTTGAAGAGCGGCTTGGCATGCAGTACGCGCCCCAGCAAAAAGA
GGCGATTCAGCGGGCGCTTTCCTCCCCGTTGTTCATTTTAACCGGCGGTCCGGGCACGGGAAAAACAACGGTCATCAAAG
GGATTGTCGAGCTGTTCGCCGCTCTTAACGGCTTATCGTTAGATCCGGCCCGCTACCAGCAAGGTGAGCCGTTCCCGGTC
GTGCTCGCCGCTCCGACCGGACGGGCGGCCAAGCGGATGAGCGAGGCGACTGGCCTGCCGGCGGCGACGATTCATCGGCT
GCTCGGTTGGAACGGAGTGGAAGGGTTCAGCCGCGATGAACATGAACCGCTTGCCGGCAAGCTGCTTGTCATCGATGAAA
TGTCGATGGTCGACACATGGCTGGCTAATCAGCTGTTCAAAGCGGTGCCAAACGGCATGCAAGTCGTGCTGGTCGGCGAT
GAAGACCAGCTGCCATCCGTCGGGCCCGGCCAAGTGCTGAAAGATTTGCTCGAGTCCGGCGTCGTTCCTTCGGTGCGGCT
GACAGATGTGTACCGTCAGGCGGAAGGATCGTCGATCATCGAGCTCGCTCATGAGGTAAAGCGCGGCGCCGTGCCGCCCG
ATTTGACTGCGCCAAAGGCGGATCGCTCGTTCATTCGCTGCCGCGCCGGCCAAGTCGTGGATGTCGTCCGGCAAATCGCG
GACAATGCGCGAAAAAAAGGCTTTTCGGTCAAAGATATTCAAGTGCTCGCCCCGATGTACCGAGGCCCGGCCGGCATTGA
TCGGCTCAACAAAGCGCTTCAAGAGCTCTTCAATCCGCCATCCGCCGGGAAGCGGGAACTGGCGGCCGGCGAGGTGGTGT
ACCGCGTCGGCGACAAGGTGCTTCAGCTCGTCAATCAGCCGGAAGACAACGTGTTTAACGGCGATATCGGCGAAGTCGTT
GCCATTTTTTACGCGAAAGAGAACACCGACAAGCAAGACTTGCTCGTTGTCTCGTTTGACGGCGTGGAAGTGACCTACAC
CCGGCAAGAGCTGTCGCAAATCACCCATGCGTACTGCTGCTCTGTGCATAAAGCGCAAGGAAGCGAATTCCCTATCGTCA
TTTTGCCCGTCGTGAAAAGCTACTATCGGATGTTGAAGCGGAACTTGCTGTATACGGCGGTGACGAGAAGCAAACAATTT
TTGATTTTATGCGGCGAAGAGGAAGCGTTTCGGGCCGGCGTCGCCAAGCAGAGCGACGGGGCGCGGCGGACGGCGCTGGC
GGAAAAACTGACGGCGGCGATGGCGCCGGTTGTCGAGGTCGAACTGCCGCTTGAGGATGCGAACGTCGGAATGGAAAACG
TTACGCCGTATGACTTTATGAGCGATGAGTCAAGCTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

AAA domain (AAA_30)

(340-548)

Helix-hairpin-helix domain (HHH_5)

(107-155)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

59.598

100

0.605

Multiple sequence alignment