Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   AABJ90_RS02300 Genome accession   NZ_AP028964
Coordinates   450340..451473 (+) Length   377 a.a.
NCBI ID   WP_014478242.1    Uniprot ID   -
Organism   Bacillus subtilis strain NA05 = NBRC 116153     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 445340..456473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ90_RS02270 (BsubNA05_04420) ywmC 446149..446832 (+) 684 WP_024571497.1 VWA domain-containing protein -
  AABJ90_RS02275 - 446963..447103 (+) 141 WP_003227702.1 hypothetical protein -
  AABJ90_RS02280 (BsubNA05_04430) ywmD 447156..447830 (+) 675 WP_029726055.1 VWA domain-containing protein -
  AABJ90_RS02285 (BsubNA05_04440) - 447925..448086 (+) 162 WP_003227706.1 hypothetical protein -
  AABJ90_RS02290 (BsubNA05_04450) fdhD 448319..449107 (+) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  AABJ90_RS02295 (BsubNA05_04460) moaA 449123..450148 (+) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  AABJ90_RS02300 (BsubNA05_04470) rapC 450340..451473 (+) 1134 WP_014478242.1 response regulator aspartate phosphatase RapB Regulator
  AABJ90_RS02305 (BsubNA05_04480) - 451629..452108 (+) 480 WP_003244390.1 hypothetical protein -
  AABJ90_RS02310 (BsubNA05_04490) csbD 452181..452369 (+) 189 WP_003227718.1 stress response protein CsbD -
  AABJ90_RS02315 (BsubNA05_04500) - 452582..452807 (+) 226 Protein_458 urea ABC transporter substrate-binding protein -
  AABJ90_RS02320 - 452892..452960 (+) 69 WP_144486809.1 hypothetical protein -
  AABJ90_RS02325 - 453061..453221 (+) 161 Protein_460 hypothetical protein -
  AABJ90_RS02330 (BsubNA05_04520) ureA 453413..453730 (+) 318 WP_003227724.1 urease subunit gamma -
  AABJ90_RS02335 (BsubNA05_04530) ureB 453727..454101 (+) 375 WP_003227726.1 urease subunit beta -
  AABJ90_RS02340 (BsubNA05_04540) ureC 454098..455807 (+) 1710 WP_338382441.1 urease subunit alpha -
  AABJ90_RS02345 (BsubNA05_04550) ywnA 455942..456343 (+) 402 WP_003227734.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45055.21 Da        Isoelectric Point: 4.7975

>NTDB_id=96575 AABJ90_RS02300 WP_014478242.1 450340..451473(+) (rapC) [Bacillus subtilis strain NA05 = NBRC 116153]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSQAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=96575 AABJ90_RS02300 WP_014478242.1 450340..451473(+) (rapC) [Bacillus subtilis strain NA05 = NBRC 116153]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCTGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATAGACTACAGAAATTATGAAAAAGCGCTTGAGCATTTGGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATCGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCCAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTACGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCCTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424

Multiple sequence alignment