Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   NST90_RS06440 Genome accession   NZ_CP150193
Coordinates   1248324..1248647 (-) Length   107 a.a.
NCBI ID   WP_000578884.1    Uniprot ID   A0A9W5R9C5
Organism   Bacillus sp. FSL E2-8900     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1243324..1253647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST90_RS06415 (NST90_06415) - 1243696..1244982 (+) 1287 WP_071732549.1 D-alanyl-D-alanine carboxypeptidase family protein -
  NST90_RS06420 (NST90_06420) - 1245173..1245742 (+) 570 WP_000767792.1 signal peptidase I -
  NST90_RS06425 (NST90_06425) - 1245803..1246390 (+) 588 WP_000172852.1 CalY family protein -
  NST90_RS06430 (NST90_06430) - 1246510..1247286 (+) 777 WP_080466832.1 DUF4047 domain-containing protein -
  NST90_RS06435 (NST90_06435) calY 1247664..1248257 (+) 594 WP_000053714.1 biofilm matrix protein CalY -
  NST90_RS06440 (NST90_06440) sinR 1248324..1248647 (-) 324 WP_000578884.1 helix-turn-helix domain-containing protein Regulator
  NST90_RS06445 (NST90_06445) - 1248727..1248861 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  NST90_RS06450 (NST90_06450) inhA1 1249204..1251594 (+) 2391 WP_001035937.1 M6 family metalloprotease immune inhibitor InhA1 -
  NST90_RS06455 (NST90_06455) - 1251766..1253133 (+) 1368 WP_283748224.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12335.17 Da        Isoelectric Point: 9.6244

>NTDB_id=965733 NST90_RS06440 WP_000578884.1 1248324..1248647(-) (sinR) [Bacillus sp. FSL E2-8900]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNNK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=965733 NST90_RS06440 WP_000578884.1 1248324..1248647(-) (sinR) [Bacillus sp. FSL E2-8900]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATAATAA
ATAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.972

100

0.682

Multiple sequence alignment