Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   AABJ90_RS00760 Genome accession   NZ_AP028964
Coordinates   145541..146230 (+) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain NA05 = NBRC 116153     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 140541..151230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ90_RS00740 (BsubNA05_01420) iolG 141695..142729 (+) 1035 WP_003244482.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -
  AABJ90_RS00745 (BsubNA05_01430) iolH 142749..143618 (+) 870 WP_015250852.1 sugar phosphate isomerase/epimerase -
  AABJ90_RS00750 (BsubNA05_01440) iolI 143704..144540 (+) 837 WP_015715014.1 2-keto-myo-inositol isomerase -
  AABJ90_RS00755 (BsubNA05_01450) iolJ 144561..145433 (+) 873 WP_338382341.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  AABJ90_RS00760 (BsubNA05_01460) braR 145541..146230 (+) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  AABJ90_RS00765 (BsubNA05_01470) yxdK 146227..147204 (+) 978 WP_024572300.1 two-component system sensor histidine kinase YxdK -
  AABJ90_RS00770 (BsubNA05_01480) yxdL 147348..148121 (+) 774 WP_338382342.1 ABC transporter ATP-binding protein YxdL -
  AABJ90_RS00775 (BsubNA05_01490) yxdM 148096..149964 (+) 1869 WP_003244410.1 ABC transporter permease YxdM -
  AABJ90_RS00780 (BsubNA05_01500) yxeA 149978..150325 (+) 348 WP_003227084.1 YxeA family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=96569 AABJ90_RS00760 WP_003243527.1 145541..146230(+) (braR) [Bacillus subtilis strain NA05 = NBRC 116153]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=96569 AABJ90_RS00760 WP_003243527.1 145541..146230(+) (braR) [Bacillus subtilis strain NA05 = NBRC 116153]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCTGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406

Multiple sequence alignment