Detailed information    

insolico Bioinformatically predicted

Overview


Name   recJ   Type   Machinery gene
Locus tag   NSQ18_RS13415 Genome accession   NZ_CP150191
Coordinates   2706838..2709162 (+) Length   774 a.a.
NCBI ID   WP_339288346.1    Uniprot ID   -
Organism   Ureibacillus sp. FSL K6-0786     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 2701838..2714162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ18_RS13400 (NSQ18_13400) - 2702251..2703768 (-) 1518 WP_168412381.1 oligosaccharide flippase family protein -
  NSQ18_RS13405 (NSQ18_13405) - 2703725..2704192 (+) 468 WP_100216199.1 post-transcriptional regulator -
  NSQ18_RS13410 (NSQ18_13410) secDF 2704431..2706698 (+) 2268 WP_339288344.1 protein translocase subunit SecDF -
  NSQ18_RS13415 (NSQ18_13415) recJ 2706838..2709162 (+) 2325 WP_339288346.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  NSQ18_RS13420 (NSQ18_13420) - 2709176..2709688 (+) 513 WP_016838387.1 adenine phosphoribosyltransferase -
  NSQ18_RS13425 (NSQ18_13425) - 2709903..2712098 (+) 2196 WP_016838386.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  NSQ18_RS13430 (NSQ18_13430) dtd 2712121..2712561 (+) 441 WP_016838385.1 D-aminoacyl-tRNA deacylase -
  NSQ18_RS13435 (NSQ18_13435) - 2712610..2714145 (-) 1536 WP_026019079.1 SH3 domain-containing protein -

Sequence


Protein


Download         Length: 774 a.a.        Molecular weight: 87907.63 Da        Isoelectric Point: 5.4403

>NTDB_id=965676 NSQ18_RS13415 WP_339288346.1 2706838..2709162(+) (recJ) [Ureibacillus sp. FSL K6-0786]
MIQSSKKWKIQNPDEMFVQQLQNNLHISSLTAKILASRVKTLDEARNIIHMKDDQLHNPYLLTGMKEAVERIELALHRGE
KILIYGDYDADGITSTSVILHTLLDLGADVDFEIPNRFTHGYGPNEELFRLAHEKGIQLIITVDNGISGIEPIRIAKELG
MDVIVTDHHEPGEELPPADVIIHPRVPEGKYPFGELAGVGVAFKLAHALYGEVPEHLFEYVALGTIADLVPLTGENRYIV
RKGLEKLRKSNHPWVQALCEASGVKQHEIDEEIIGFYFGPRLNAIGRLGDAKPGVEFLMSEDLASATMGAKLLNEKNNER
KEYVNSITEEAIEMIENNPDISNSLVLVVAKEGWNPGVIGIVASRLVEKYYKPTIVLSIDSELGLAKGSGRSIEGFHLYN
ELAKNRDILPHFGGHPMAAGMTLSAEHIDELRVRLHQQASTCLSDEMLTPTLYIDVPIDLSEVTVEAIEELQKLKPFGVG
FEKPIFAIQQVSIRSMRKIGANENHIKMELEDAYGILDAVGFNKGYLFNEISYGVKLSIVGDLQINEWQGRKKPQFLLSD
VQILEWQLFDYRGKVNANHWVGSIPIEESSFIAFREETIQYFQAVIPSIQLVEDEIDNSLSSYIVLLDLPKRIHTMEKLI
EIAKPQRIYAVFYTPNSQYFNGMPTRKHFAQYYTFLKNRPFFNLNEHIHQLSKHFGLNVDTIKFMTKVFFELGFVTIENG
LLSVNEFASKRSLTEATTYQLRQQQIELEQKFLYSTYSELKQWFDNRMKELSYS

Nucleotide


Download         Length: 2325 bp        

>NTDB_id=965676 NSQ18_RS13415 WP_339288346.1 2706838..2709162(+) (recJ) [Ureibacillus sp. FSL K6-0786]
ATGATACAATCATCAAAAAAATGGAAGATCCAAAATCCCGATGAAATGTTTGTTCAACAATTACAAAACAATTTACATAT
TTCTAGTTTGACTGCAAAAATATTAGCATCAAGAGTGAAGACACTAGATGAAGCTAGAAATATTATACATATGAAAGATG
ACCAACTACATAATCCTTATTTGTTAACGGGGATGAAAGAAGCGGTAGAACGAATTGAATTAGCATTACATCGAGGGGAA
AAGATATTAATCTATGGAGATTATGATGCAGATGGTATTACGAGTACGTCCGTCATATTGCATACATTGCTTGATTTAGG
AGCAGATGTAGATTTTGAGATTCCGAATCGCTTCACACATGGATATGGGCCAAACGAAGAATTGTTCAGATTGGCACATG
AGAAAGGAATCCAACTGATTATTACTGTCGATAATGGAATTAGCGGCATCGAACCGATACGCATAGCAAAAGAGCTTGGT
ATGGATGTGATTGTTACAGATCACCATGAACCGGGAGAAGAGCTGCCGCCTGCAGACGTCATTATTCATCCGAGGGTACC
AGAAGGGAAATATCCTTTTGGTGAATTGGCAGGGGTAGGCGTAGCTTTTAAGCTTGCCCACGCATTATATGGAGAGGTGC
CTGAGCATTTGTTTGAATACGTTGCACTTGGCACAATCGCAGATCTTGTCCCCTTAACTGGAGAGAATCGATACATTGTT
CGTAAAGGGTTAGAGAAATTGCGAAAGTCAAATCACCCATGGGTTCAAGCTTTATGTGAAGCATCAGGAGTAAAGCAGCA
TGAAATCGATGAAGAAATTATCGGTTTTTATTTTGGTCCTCGATTAAATGCTATAGGACGCCTAGGTGATGCAAAACCCG
GTGTAGAGTTTTTAATGAGTGAAGATTTAGCAAGTGCCACAATGGGAGCTAAATTGCTAAATGAAAAAAATAATGAGAGA
AAAGAGTATGTCAATTCGATTACTGAAGAAGCAATAGAAATGATTGAAAATAATCCGGATATTAGCAATTCTTTAGTGCT
TGTCGTGGCAAAAGAAGGATGGAATCCGGGGGTAATTGGAATTGTTGCTTCCCGTTTAGTAGAGAAATATTATAAACCGA
CAATCGTGTTATCGATCGATTCAGAATTGGGATTAGCAAAAGGTTCAGGACGCAGCATCGAAGGATTTCATTTATACAAT
GAACTAGCAAAAAATCGGGATATTCTTCCGCATTTTGGCGGACATCCAATGGCTGCAGGTATGACGCTTTCAGCTGAACA
TATCGATGAATTGAGAGTACGACTTCATCAACAAGCATCAACATGTTTATCCGATGAAATGTTAACGCCGACATTATACA
TTGATGTTCCTATCGATTTAAGTGAAGTAACGGTTGAAGCAATTGAAGAATTACAGAAGTTGAAACCATTTGGTGTTGGA
TTTGAAAAGCCGATTTTTGCTATACAACAAGTTTCGATTCGTTCAATGCGCAAAATCGGTGCAAATGAGAACCATATAAA
AATGGAATTGGAAGATGCATATGGAATTCTTGATGCAGTTGGTTTTAACAAAGGTTATTTATTCAATGAAATTTCCTATG
GCGTGAAATTATCCATTGTTGGTGATTTGCAAATCAATGAATGGCAAGGTAGAAAAAAACCGCAATTTTTACTTTCGGAT
GTTCAGATACTTGAGTGGCAGTTATTTGATTATCGGGGAAAAGTAAATGCCAATCATTGGGTGGGAAGCATTCCTATTGA
AGAATCATCCTTTATTGCTTTTCGTGAGGAAACAATTCAATATTTTCAAGCAGTCATACCATCCATTCAATTAGTTGAAG
ATGAAATTGACAATTCTCTTTCATCGTATATTGTATTATTGGATTTACCAAAACGTATTCATACAATGGAAAAGCTAATT
GAAATTGCAAAACCGCAACGTATTTATGCGGTATTTTACACACCGAATTCCCAATATTTTAATGGCATGCCAACACGAAA
GCATTTTGCTCAATACTATACATTTCTAAAAAATCGCCCATTCTTTAACTTAAACGAACATATTCATCAACTATCCAAAC
ATTTTGGTTTAAATGTGGATACAATAAAGTTTATGACAAAGGTGTTTTTTGAGCTCGGTTTTGTTACAATAGAAAATGGT
TTGCTTTCCGTCAATGAATTTGCAAGTAAACGTTCTTTAACTGAAGCTACCACATATCAATTGCGACAACAGCAAATCGA
ATTGGAACAAAAATTTTTATACTCAACTTATTCAGAGTTAAAACAATGGTTTGATAATCGAATGAAGGAATTATCTTATT
CCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

48.849

100

0.494


Multiple sequence alignment