Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NSQ18_RS07510 Genome accession   NZ_CP150191
Coordinates   1550246..1551616 (+) Length   456 a.a.
NCBI ID   WP_016838528.1    Uniprot ID   A0A840PVY5
Organism   Ureibacillus sp. FSL K6-0786     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1545246..1556616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ18_RS07490 (NSQ18_07490) - 1545300..1545764 (+) 465 WP_026019087.1 CtsR family transcriptional regulator -
  NSQ18_RS07495 (NSQ18_07495) - 1545779..1546333 (+) 555 WP_016838525.1 UvrB/UvrC motif-containing protein -
  NSQ18_RS07500 (NSQ18_07500) - 1546330..1547430 (+) 1101 WP_016838526.1 protein arginine kinase -
  NSQ18_RS07505 (NSQ18_07505) - 1547420..1549858 (+) 2439 WP_016838527.1 ATP-dependent Clp protease ATP-binding subunit -
  NSQ18_RS07510 (NSQ18_07510) radA 1550246..1551616 (+) 1371 WP_016838528.1 DNA repair protein RadA Machinery gene
  NSQ18_RS07515 (NSQ18_07515) - 1551815..1552909 (+) 1095 WP_016838530.1 PIN/TRAM domain-containing protein -
  NSQ18_RS07520 (NSQ18_07520) ispD 1552941..1553651 (+) 711 WP_016838531.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  NSQ18_RS07525 (NSQ18_07525) ispF 1553829..1554308 (+) 480 WP_016838532.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  NSQ18_RS07530 (NSQ18_07530) gltX 1554499..1555959 (+) 1461 WP_339287592.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50447.04 Da        Isoelectric Point: 7.1155

>NTDB_id=965666 NSQ18_RS07510 WP_016838528.1 1550246..1551616(+) (radA) [Ureibacillus sp. FSL K6-0786]
MAKKKTKFCCQSCGYESPKWLGRCPGCGEWNTFVEEIEVMTKSRGVFQHSEAISQKAVPIISIETQEEQRVQTSMVELNR
VLGGGIVPGSLVLIGGDPGIGKSTLLMQLSAELSNNGHRVLYISGEESLKQTRLRATRIGVQSNELFIYAETDLELIRHS
IEEVQPKFIIVDSIQTVHHPEVTSAPGSVSQVRECTSELMRIAKTKGIATFLVGHVTKEGQIAGPRILEHMVDTVLYFEG
ERHHTYRILRSHKNRFGSTNEIAIFEMIHSGLKEVLNPSELFLEERSHGAAGSTVVASMEGTRPILVEIQSLVTPTSFNY
PKRMATGVDQNRVQLLMAVLEKRMGMLLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFRNQPVQVTDVYIGEVGLTGE
VRRVSRIEQRVHEAARLGFKRAIIPASNIGGWEYPKDIEVIGVQTINEALRVCFGN

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=965666 NSQ18_RS07510 WP_016838528.1 1550246..1551616(+) (radA) [Ureibacillus sp. FSL K6-0786]
ATGGCAAAAAAGAAAACAAAGTTTTGCTGTCAATCATGTGGCTATGAATCTCCTAAATGGTTGGGGAGATGTCCTGGTTG
TGGCGAGTGGAATACCTTTGTAGAAGAAATAGAAGTGATGACGAAATCTCGTGGAGTGTTTCAGCATTCGGAAGCTATAA
GTCAGAAGGCCGTACCAATTATCAGCATCGAAACACAAGAAGAACAAAGAGTCCAAACAAGCATGGTGGAATTAAATCGT
GTGCTTGGAGGTGGAATTGTACCAGGTTCACTTGTTTTGATTGGGGGAGATCCTGGTATAGGGAAATCAACGCTACTTAT
GCAACTTTCCGCTGAATTATCCAATAATGGACATCGGGTGCTTTACATTTCAGGAGAAGAATCGTTGAAACAAACAAGAT
TACGCGCAACAAGAATCGGTGTCCAATCAAATGAATTATTTATTTATGCTGAAACTGATTTAGAACTCATTCGTCATAGT
ATTGAAGAGGTTCAACCGAAGTTTATCATTGTTGACTCCATTCAAACAGTGCATCATCCAGAAGTGACGAGTGCTCCTGG
GAGCGTATCGCAAGTTAGAGAATGTACTTCAGAATTGATGAGAATAGCGAAGACGAAAGGAATTGCAACATTTCTTGTAG
GACATGTTACAAAGGAAGGGCAAATTGCAGGGCCTAGAATATTAGAACATATGGTAGACACCGTACTATATTTTGAAGGT
GAAAGACATCATACGTATCGAATATTAAGAAGCCATAAAAATCGCTTCGGATCAACTAATGAAATTGCTATTTTTGAAAT
GATTCATTCGGGTTTAAAAGAAGTGTTAAATCCGTCTGAATTATTTTTAGAAGAACGTTCACATGGGGCAGCTGGTTCGA
CGGTCGTTGCTTCCATGGAAGGTACAAGACCTATACTTGTCGAGATTCAATCATTAGTTACACCAACTAGTTTCAATTAT
CCAAAAAGAATGGCTACCGGTGTTGATCAAAATAGAGTTCAATTATTGATGGCTGTTTTGGAAAAAAGAATGGGCATGCT
GTTGCAAGCGCAAGATGCATATATTAAGGTGGCAGGAGGCGTAAAGCTGGACGAACCTGCGATTGATCTCGCCGTTCTTA
CCTCCATAGTCTCCAGTTTTAGAAATCAGCCTGTTCAAGTTACAGATGTTTATATCGGTGAAGTAGGACTTACCGGAGAA
GTAAGACGGGTATCCCGCATCGAACAAAGAGTTCATGAAGCTGCAAGACTTGGATTTAAACGAGCCATTATCCCTGCTTC
TAATATAGGAGGTTGGGAATACCCAAAAGACATTGAAGTAATTGGGGTGCAAACCATTAACGAAGCATTAAGAGTTTGTT
TTGGTAATTGA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(349-450)

AAA domain (AAA_25)

(65-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A840PVY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.46

100

0.706
  radA Streptococcus pneumoniae Rx1

60.832

100

0.61
  radA Streptococcus pneumoniae D39

60.832

100

0.61
  radA Streptococcus pneumoniae R6

60.832

100

0.61
  radA Streptococcus pneumoniae TIGR4

60.832

100

0.61
  radA Streptococcus mitis NCTC 12261

60.832

100

0.61
  radA Streptococcus mitis SK321

60.613

100

0.607

Multiple sequence alignment