Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NSU19_RS16975 Genome accession   NZ_CP150190
Coordinates   3507495..3508448 (-) Length   317 a.a.
NCBI ID   WP_339197568.1    Uniprot ID   -
Organism   Aeribacillus sp. FSL k6-2211     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3502495..3513448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU19_RS16955 (NSU19_16955) - 3503118..3504188 (+) 1071 WP_339197558.1 hypothetical protein -
  NSU19_RS16960 (NSU19_16960) - 3504683..3505639 (-) 957 WP_327873282.1 siderophore ABC transporter substrate-binding protein -
  NSU19_RS16965 (NSU19_16965) - 3505803..3506561 (-) 759 WP_339197562.1 ABC transporter ATP-binding protein -
  NSU19_RS16970 (NSU19_16970) - 3506555..3507505 (-) 951 WP_339197564.1 iron chelate uptake ABC transporter family permease subunit -
  NSU19_RS16975 (NSU19_16975) ceuB 3507495..3508448 (-) 954 WP_339197568.1 ABC transporter permease Machinery gene
  NSU19_RS16980 (NSU19_16980) - 3508832..3509308 (+) 477 WP_339197571.1 N-acetyltransferase -
  NSU19_RS16985 (NSU19_16985) - 3509528..3510382 (-) 855 WP_327873283.1 Cof-type HAD-IIB family hydrolase -
  NSU19_RS16990 (NSU19_16990) - 3510422..3512284 (-) 1863 WP_339197573.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34907.05 Da        Isoelectric Point: 9.9082

>NTDB_id=965636 NSU19_RS16975 WP_339197568.1 3507495..3508448(-) (ceuB) [Aeribacillus sp. FSL k6-2211]
MKKRYLIIALIILSIASIFIGVKDIKPTDLFNLTDEQIQILIISRIPRVISIIIAGTSISIAGLIMQQLSRNKFVSPTTA
GTMDSARLGILVAIMVFADASPIQKMIVAFAFALLGTFIFMKILEKIKYKDTIFVPLVGLMFGNIIGSITTFFAYKNNLI
QNVSSWLEGDFSLILKGQYELLYVSIPFVLIAYLYANQFTVAGMGEEFSKNLGLNYKQVVNIGLVIVALITSSVVLTVGT
IPFLGLVVPNIVAIYNGDHLKKNLIHTALLGAVFVMFCDILGRIIIYPYEISISLTVGVIGSAIFVYLLMRRKAYGL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=965636 NSU19_RS16975 WP_339197568.1 3507495..3508448(-) (ceuB) [Aeribacillus sp. FSL k6-2211]
ATGAAAAAACGATATTTGATCATTGCTCTCATTATTCTTTCAATTGCATCGATTTTTATCGGGGTAAAAGATATTAAACC
AACTGATTTATTCAATTTGACAGATGAACAAATACAAATTTTGATCATCAGCAGAATTCCGCGTGTCATTAGCATTATTA
TTGCAGGAACGAGCATAAGCATTGCCGGTCTTATTATGCAGCAGCTGAGCAGAAACAAGTTCGTTTCCCCAACTACGGCA
GGAACGATGGATTCCGCCAGATTGGGGATTTTAGTTGCGATCATGGTTTTTGCAGACGCTAGTCCGATTCAAAAAATGAT
TGTTGCATTTGCTTTTGCACTTTTAGGAACATTTATCTTTATGAAAATATTGGAGAAAATCAAATATAAAGATACTATTT
TTGTTCCTCTAGTCGGGCTGATGTTCGGCAACATCATTGGATCTATCACTACTTTTTTTGCATACAAAAATAATTTGATT
CAAAATGTTTCCTCATGGCTGGAAGGAGATTTTTCGTTAATTTTAAAAGGTCAATATGAATTATTGTATGTCAGCATTCC
TTTTGTATTAATTGCATACTTGTATGCGAATCAATTCACTGTCGCTGGAATGGGAGAGGAATTTTCGAAAAATTTAGGCT
TGAATTATAAACAAGTTGTCAATATCGGACTTGTTATCGTAGCTTTGATCACTTCATCTGTTGTATTGACGGTTGGAACC
ATTCCGTTTCTAGGTCTTGTCGTTCCGAATATTGTCGCCATATACAATGGAGACCATTTGAAAAAGAATTTGATTCATAC
CGCTTTGCTCGGTGCTGTTTTCGTTATGTTTTGCGATATTTTAGGGCGAATCATTATATATCCGTACGAAATCTCGATCA
GCTTAACCGTCGGTGTCATCGGCAGTGCCATTTTTGTTTACTTACTTATGAGGAGAAAAGCATATGGGTTATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.994

98.738

0.533

Multiple sequence alignment