Detailed information    

insolico Bioinformatically predicted

Overview


Name   comQ   Type   Regulator
Locus tag   ACKFA7_RS14570 Genome accession   NZ_CP175553
Coordinates   3014920..3015831 (-) Length   303 a.a.
NCBI ID   WP_079891857.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 4-9-2     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context


Location: 3009920..3020831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKFA7_RS14535 (ACKFA7_14535) - 3010165..3010641 (+) 477 WP_038459660.1 Na+/H+ antiporter subunit E -
  ACKFA7_RS14540 (ACKFA7_14540) - 3010641..3010925 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  ACKFA7_RS14545 (ACKFA7_14545) mnhG 3010909..3011283 (+) 375 WP_007613429.1 monovalent cation/H(+) antiporter subunit G -
  ACKFA7_RS14550 (ACKFA7_14550) - 3011323..3011706 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  ACKFA7_RS14555 (ACKFA7_14555) comA 3011728..3012372 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  ACKFA7_RS14560 (ACKFA7_14560) comP 3012453..3014744 (-) 2292 WP_038459663.1 histidine kinase Regulator
  ACKFA7_RS14565 (ACKFA7_14565) comX 3014756..3014920 (-) 165 WP_007613432.1 competence pheromone ComX -
  ACKFA7_RS14570 (ACKFA7_14570) comQ 3014920..3015831 (-) 912 WP_079891857.1 polyprenyl synthetase family protein Regulator
  ACKFA7_RS14575 (ACKFA7_14575) degQ 3015983..3016123 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  ACKFA7_RS14580 (ACKFA7_14580) - 3016589..3016930 (+) 342 WP_038459666.1 hypothetical protein -
  ACKFA7_RS14585 (ACKFA7_14585) - 3016937..3018160 (-) 1224 WP_032876792.1 EAL and HDOD domain-containing protein -
  ACKFA7_RS14590 (ACKFA7_14590) - 3018290..3019756 (-) 1467 WP_014418767.1 nicotinate phosphoribosyltransferase -
  ACKFA7_RS14595 (ACKFA7_14595) - 3019774..3020325 (-) 552 WP_003152033.1 cysteine hydrolase family protein -
  ACKFA7_RS14600 (ACKFA7_14600) - 3020422..3020820 (-) 399 WP_003152031.1 YueI family protein -

Sequence


Protein


Download         Length: 303 a.a.        Molecular weight: 34944.60 Da        Isoelectric Point: 5.5245

>NTDB_id=965618 ACKFA7_RS14570 WP_079891857.1 3014920..3015831(-) (comQ) [Bacillus amyloliquefaciens strain 4-9-2]
MCLDAKTIKEKMKEIVEHNICNTNLKMYLLKFIASKDSFGFAELAYQHYKAFNGRDTEAILKLAVGIELLVLSYDIYDDL
EDNDNLKMEWMKTGLPITLNTVTALYTLSIQVMNQISENPYFLKQILNFALNSIEGQQDDILNAPQTEEECLKMIKNKSG
SLTALPCVMGAMLATGKLNPIVQSYSYELGIISQIDNDYQGLFYLNNDFVQRKNTLAYLYLKKKFNKASEEILQWYENPE
LFKTLKTRDIKKKLIEAGVTQYLLVLKHLSLKKIKSKIFELEIERNKTETLLNAIVNLEEDEK

Nucleotide


Download         Length: 912 bp        

>NTDB_id=965618 ACKFA7_RS14570 WP_079891857.1 3014920..3015831(-) (comQ) [Bacillus amyloliquefaciens strain 4-9-2]
ATGTGTTTAGATGCCAAAACGATTAAAGAGAAAATGAAGGAAATTGTGGAGCACAATATATGCAATACTAACTTGAAAAT
GTACCTTCTAAAATTTATTGCATCAAAAGATTCATTTGGATTTGCTGAATTGGCATATCAACATTACAAAGCGTTCAATG
GCAGAGACACAGAGGCGATTTTAAAGTTAGCCGTAGGCATAGAATTATTAGTCCTGTCATACGACATTTATGATGATTTA
GAAGATAATGATAATCTGAAAATGGAATGGATGAAAACAGGTCTCCCCATTACGCTGAATACTGTAACGGCCCTCTATAC
ATTAAGTATACAGGTTATGAATCAGATTAGTGAAAATCCGTATTTTCTTAAGCAAATATTAAACTTTGCTTTGAATTCAA
TTGAGGGCCAGCAAGATGATATTTTGAATGCACCGCAAACTGAAGAAGAGTGTTTGAAAATGATTAAGAATAAATCTGGC
TCTTTAACTGCATTGCCTTGCGTTATGGGCGCGATGCTGGCTACAGGAAAGTTAAATCCAATCGTTCAATCATATTCATA
TGAACTCGGAATAATATCCCAGATTGATAATGATTATCAAGGTTTGTTTTACTTGAATAATGATTTTGTTCAACGCAAAA
ATACACTTGCTTATTTATACTTAAAAAAGAAATTCAATAAAGCTTCTGAAGAAATCTTACAATGGTATGAAAACCCAGAG
TTATTCAAAACCTTAAAGACCCGAGACATAAAAAAGAAATTAATTGAAGCAGGTGTAACCCAATACTTATTGGTTTTGAA
ACATTTGTCGTTAAAAAAAATAAAAAGTAAGATATTTGAATTGGAGATAGAGAGAAATAAAACGGAAACTTTATTAAATG
CGATTGTTAATTTAGAGGAGGATGAAAAATAA

Domains


Predicted by InterProScan.

(48-237)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

43.416

92.739

0.403


Multiple sequence alignment