Detailed information NTG0965615

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: ACKFA7_RS14265
• Genome accession: NZ_CP175553
• Coordinates: 2955404..2956534 (-)
• Length: 376 a.a.
• NCBI ID: WP_038464238.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain 4-9-2
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2950404..2961534

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKFA7_RS14240 (ACKFA7_14240)	-	2950675..2951520 (-)	846	WP_007613332.1	glucosaminidase domain-containing protein	-
ACKFA7_RS14245 (ACKFA7_14245)	hmpA	2951662..2952837 (-)	1176	WP_038464232.1	NO-inducible flavohemoprotein	-
ACKFA7_RS14250 (ACKFA7_14250)	-	2953055..2953696 (+)	642	WP_038464235.1	cupin domain-containing protein	-
ACKFA7_RS14255 (ACKFA7_14255)	-	2953763..2954082 (-)	320	Protein_2747	hypothetical protein	-
ACKFA7_RS14260 (ACKFA7_14260)	-	2955144..2955269 (-)	126	WP_258334715.1	hypothetical protein	-
ACKFA7_RS14265 (ACKFA7_14265)	rapC	2955404..2956534 (-)	1131	WP_038464238.1	tetratricopeptide repeat protein	Regulator
ACKFA7_RS14270 (ACKFA7_14270)	-	2956926..2957129 (+)	204	WP_038464241.1	hypothetical protein	-
ACKFA7_RS14275 (ACKFA7_14275)	-	2957255..2957761 (+)	507	WP_038464244.1	hypothetical protein	-
ACKFA7_RS14285 (ACKFA7_14285)	-	2958142..2958972 (-)	831	WP_038464603.1	undecaprenyl-diphosphate phosphatase	-
ACKFA7_RS14290 (ACKFA7_14290)	-	2959063..2960223 (-)	1161	WP_007613339.1	AI-2E family transporter	-
ACKFA7_RS14295 (ACKFA7_14295)	-	2960403..2961389 (+)	987	WP_038459615.1	Gfo/Idh/MocA family protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44352.74 Da
• Isoelectric Point: 6.6658

>NTDB_id=965615 ACKFA7_RS14265 WP_038464238.1 2955404..2956534(-) (rapC) [Bacillus amyloliquefaciens strain 4-9-2]
MSSVLPSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEINEMEKDEYLLIYYTLMKFRHQLMLDYLEPVTTRVRPTIDE
LLEKIEASNKGISGLLCYYSLFFRGMYEFDQNQYVKAIGFYREAEKQLVHVHDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYNQYELYKVRKIQCLFVVSGNYVDFKRYEKSLPHLEKALELSKQVNNNERLLSSAYYNIGKNYGDLEEYSKAE
IYLKKAAEISEKYKLGNLPHSLFTYAKLLFKQGKTSEAIQISKKGLSSAIFQGDKLFESLQKYLEALYINAIDQMGIKQT
IDYLEKNKNYSYVEDIALDTAAVYAESKQYDKSYFYHQKMIQTQKQIQRGECLYEF

Nucleotide

• Length: 1131 bp

>NTDB_id=965615 ACKFA7_RS14265 WP_038464238.1 2955404..2956534(-) (rapC) [Bacillus amyloliquefaciens strain 4-9-2]
GTGAGTTCTGTTTTACCATCATCGGAGGTTGGCGTTAAGATTAATGAATGGTACAAAATGATACGTCAGTTCAGTGTTCC
GGATGCGGAGATTTTGAAAGCGGAAGTGGAACAAGAAATCAATGAGATGGAAAAAGACGAGTATCTACTGATTTACTACA
CCCTCATGAAATTCCGCCATCAGCTCATGCTGGATTATTTAGAACCGGTGACTACCCGTGTGAGACCGACAATTGACGAG
CTGCTAGAAAAAATCGAAGCATCAAATAAAGGAATTTCCGGCCTGCTGTGCTATTATTCTTTATTTTTCCGCGGCATGTA
TGAATTTGATCAAAATCAGTATGTAAAGGCGATCGGCTTTTATAGAGAGGCTGAAAAACAACTCGTTCATGTGCATGATG
AAATTGAGAGAGCGGAGTTTCATTTTAAACTGGCTGAAGCATATTACGGTATGAAACAAAGTCACGTCTCTATGCATCAC
GTAAAGCAAGCGCTCGATATTTACAATCAGTATGAGTTGTATAAGGTCCGGAAAATTCAATGTCTATTTGTCGTATCAGG
GAACTATGTAGACTTTAAACGTTATGAAAAAAGCTTGCCGCATTTAGAAAAAGCTTTAGAGTTGTCGAAACAAGTAAACA
ATAATGAAAGGCTGCTCAGTTCTGCTTATTACAACATAGGAAAGAATTACGGAGACTTAGAAGAATACAGTAAAGCTGAA
ATCTACTTAAAAAAAGCAGCGGAGATATCTGAAAAGTATAAATTGGGTAACCTTCCGCATTCCTTGTTTACATACGCAAA
GCTTCTATTTAAACAAGGGAAAACAAGCGAGGCGATTCAAATCAGCAAAAAGGGACTTTCATCAGCGATATTTCAAGGAG
ATAAGCTGTTTGAATCTCTGCAAAAATATTTGGAGGCTTTATATATTAATGCAATAGACCAAATGGGAATCAAACAAACA
ATTGATTACCTTGAGAAAAATAAAAACTATTCGTATGTAGAAGATATTGCTCTTGATACGGCTGCTGTTTATGCAGAGTC
AAAGCAATATGACAAATCTTATTTTTATCATCAAAAAATGATTCAAACGCAAAAACAAATTCAGAGGGGAGAATGCCTGT
ATGAATTTTAG

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (193-252)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.327	100	0.447
rapF	Bacillus subtilis subsp. subtilis str. 168	40.106	100	0.404