Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ACKFA7_RS13735 Genome accession   NZ_CP175553
Coordinates   2869529..2870233 (-) Length   234 a.a.
NCBI ID   WP_046702254.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 4-9-2     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2864529..2875233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKFA7_RS13715 (ACKFA7_13715) cysK 2864539..2865510 (+) 972 WP_095352847.1 cysteine synthase A -
  ACKFA7_RS13720 (ACKFA7_13720) pepV 2865548..2866939 (-) 1392 WP_038464187.1 dipeptidase PepV -
  ACKFA7_RS13725 (ACKFA7_13725) - 2867035..2868339 (+) 1305 WP_038464190.1 NCS2 family permease -
  ACKFA7_RS13730 (ACKFA7_13730) - 2868372..2869532 (-) 1161 WP_046702255.1 ABC transporter permease -
  ACKFA7_RS13735 (ACKFA7_13735) pptA 2869529..2870233 (-) 705 WP_046702254.1 ABC transporter ATP-binding protein Regulator
  ACKFA7_RS13740 (ACKFA7_13740) - 2870514..2870735 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  ACKFA7_RS13745 (ACKFA7_13745) - 2870863..2871582 (-) 720 WP_046702253.1 pseudouridine synthase -
  ACKFA7_RS13750 (ACKFA7_13750) - 2871638..2873275 (-) 1638 WP_046702252.1 polysaccharide biosynthesis protein -
  ACKFA7_RS13755 (ACKFA7_13755) - 2873482..2874747 (+) 1266 WP_007408798.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 25673.38 Da        Isoelectric Point: 4.4290

>NTDB_id=965613 ACKFA7_RS13735 WP_046702254.1 2869529..2870233(-) (pptA) [Bacillus amyloliquefaciens strain 4-9-2]
MGELLNANIVCAGYADRPKVISDVSLSVNAGEIAGLIGANGAGKSTVIKAVLGLSRDIEGGIEWNDSSYAYIPERPSFYD
ELTLWEHLELTGSLRGIEGEECCERAGRLLEEFSLTSVKHDLPSGFSKGMQQKLMLIQAFLAKPDIYIIDEPFIGLDPIS
TKLFTDMLIAEKERGAGILMCTHVLDTAEKICDRFYLLDQGALLLQGTLEELQEKTGSRSLLDCFYSAVRSSQR

Nucleotide


Download         Length: 705 bp        

>NTDB_id=965613 ACKFA7_RS13735 WP_046702254.1 2869529..2870233(-) (pptA) [Bacillus amyloliquefaciens strain 4-9-2]
TTGGGAGAATTATTGAATGCAAACATTGTCTGCGCCGGTTATGCTGACAGGCCGAAGGTGATTTCTGATGTATCTCTGTC
AGTCAACGCTGGTGAAATTGCCGGTTTAATCGGAGCGAACGGCGCAGGGAAAAGCACAGTGATAAAGGCGGTTCTCGGGC
TGTCCCGGGATATAGAAGGCGGTATTGAGTGGAATGATTCATCTTATGCTTACATACCGGAGCGTCCGAGTTTTTACGAT
GAACTGACGCTTTGGGAGCACCTCGAGCTGACCGGGTCATTGCGGGGTATAGAAGGGGAAGAATGCTGTGAGCGGGCAGG
GCGGCTGCTTGAAGAGTTTTCACTGACATCGGTAAAACATGATTTGCCTTCCGGTTTTTCAAAAGGGATGCAGCAAAAAT
TGATGCTCATACAGGCATTTTTGGCGAAGCCGGATATTTACATCATTGATGAGCCTTTTATCGGACTTGATCCGATCTCA
ACGAAGCTGTTTACCGACATGCTGATTGCTGAGAAAGAAAGGGGCGCGGGGATTTTGATGTGCACTCATGTTCTGGATAC
GGCGGAAAAAATCTGCGACCGGTTTTATTTGCTGGATCAGGGCGCTCTGCTTCTTCAAGGCACGTTAGAGGAGCTTCAGG
AAAAAACGGGGAGCCGTTCACTGCTGGATTGCTTTTATTCAGCGGTTCGGAGCAGTCAGCGATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(22-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

45

100

0.462
  pptA Streptococcus thermophilus LMD-9

44.167

100

0.453

Multiple sequence alignment