Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   ACKFA7_RS08315 Genome accession   NZ_CP175553
Coordinates   1706163..1708025 (+) Length   620 a.a.
NCBI ID   WP_038458059.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 4-9-2     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1701163..1713025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKFA7_RS08300 (ACKFA7_08300) ymcA 1702219..1702650 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  ACKFA7_RS08305 (ACKFA7_08305) cotE 1702898..1703443 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  ACKFA7_RS08310 (ACKFA7_08310) hexA 1703562..1706147 (+) 2586 WP_007409829.1 DNA mismatch repair protein MutS Machinery gene
  ACKFA7_RS08315 (ACKFA7_08315) hexB 1706163..1708025 (+) 1863 WP_038458059.1 DNA mismatch repair endonuclease MutL Machinery gene
  ACKFA7_RS08320 (ACKFA7_08320) - 1708427..1708636 (-) 210 WP_007611548.1 hypothetical protein -
  ACKFA7_RS08325 (ACKFA7_08325) - 1709566..1710243 (+) 678 WP_038458061.1 MBL fold metallo-hydrolase -
  ACKFA7_RS08330 (ACKFA7_08330) fabD 1710558..1711427 (+) 870 WP_038458064.1 ACP S-malonyltransferase -
  ACKFA7_RS08335 (ACKFA7_08335) - 1711564..1712538 (+) 975 WP_012117590.1 acyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 620 a.a.        Molecular weight: 69688.94 Da        Isoelectric Point: 6.0941

>NTDB_id=965573 ACKFA7_RS08315 WP_038458059.1 1706163..1708025(+) (hexB) [Bacillus amyloliquefaciens strain 4-9-2]
MAKVIQLSDELSNKIAAGEVVERPASVVKELVENAIDANSTVIEIDIEEAGLSSIRVLDNGEGMETDDCKRAFRRHATSK
IKDENDLFRVRTLGFRGEALPSIASVSHLEIKTSIGEGAGTHLILQGGNIISEQKSSSRKGTEIIVTNLFFNTPARLKYM
KTVHTELGNITDVVNRIALAHPEVSIRLRHQGKNLLQTNGNGDVRHVLAAIYGTAVAKKMIPLHVSSLDFEVKGYIALPE
ITRASRNYMSSVINGRYIKNFPLVKAVHEGYHTLLPIGRHPITFIEITMDPILVDVNVHPSKLEVRLSKETELHELIRDG
IKEVFQKQRLIPSAQLPKKSAPAPAKNEQQFMTFEESAPERKLPEKTPEPSYSPMKLSSVVKEPEPLIIEEEIADHGVPP
EIGMPETAAPVSDIPEPEAVSEEMREERVPVMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGQVEPEVQ
DMIVPLTFHYAANEALIIDQHQHELESVGVFLEAFGTNSYIVRCHPAWFPKGEEAELIEEIIQQVLDAKQIDIKKLREEA
AIMMSCKGSIKANRHLRNDEIKALLDDLRRTTDPFTCPHGRPIIIHHSTYEMEKMFKRVM

Nucleotide


Download         Length: 1863 bp        

>NTDB_id=965573 ACKFA7_RS08315 WP_038458059.1 1706163..1708025(+) (hexB) [Bacillus amyloliquefaciens strain 4-9-2]
TTGGCAAAAGTCATCCAGCTGTCAGATGAACTTTCAAATAAAATAGCGGCCGGCGAGGTGGTCGAACGGCCTGCCTCAGT
CGTTAAAGAATTGGTGGAAAACGCCATCGACGCAAACAGCACAGTCATTGAAATCGACATAGAGGAAGCGGGGCTTTCGT
CGATTCGGGTGCTCGATAACGGCGAAGGGATGGAAACCGATGATTGCAAGCGGGCTTTCCGCCGCCACGCGACCAGTAAA
ATCAAAGATGAAAACGACCTGTTCCGGGTGAGAACACTCGGTTTCCGCGGAGAAGCTTTGCCAAGTATCGCGTCTGTTTC
TCATCTGGAAATCAAAACGAGCATCGGCGAGGGAGCGGGCACCCATCTCATTCTTCAGGGCGGGAATATCATTTCTGAAC
AGAAATCCTCCAGCAGAAAAGGAACGGAGATTATCGTTACCAACCTGTTTTTCAATACACCCGCCAGATTGAAATATATG
AAAACCGTGCATACGGAGCTCGGCAATATTACGGATGTTGTCAACCGGATCGCTCTTGCGCATCCGGAAGTATCCATCCG
TCTCCGCCATCAGGGGAAAAATCTGCTGCAGACAAACGGTAATGGGGACGTGCGCCATGTGCTGGCCGCAATTTACGGGA
CGGCGGTTGCGAAAAAAATGATACCGCTCCATGTCAGCTCGCTTGATTTTGAAGTCAAGGGCTACATTGCGCTTCCGGAA
ATCACGCGTGCATCCAGAAACTACATGTCATCTGTCATTAACGGAAGATACATTAAGAATTTCCCGCTTGTAAAAGCGGT
GCATGAGGGCTATCACACACTTCTGCCGATCGGCCGCCATCCGATTACGTTTATCGAAATTACGATGGACCCGATTTTGG
TTGATGTCAATGTCCATCCGTCGAAGCTTGAAGTCCGCCTCAGCAAAGAGACGGAGCTGCATGAGCTGATCCGTGACGGG
ATAAAGGAAGTGTTTCAAAAGCAGCGGCTTATTCCGAGCGCCCAGCTCCCGAAAAAATCAGCGCCGGCACCGGCCAAAAA
CGAACAGCAATTTATGACATTCGAGGAAAGCGCGCCTGAGCGGAAACTTCCTGAAAAAACGCCGGAGCCGTCTTACTCAC
CAATGAAGCTGAGTTCGGTCGTAAAAGAGCCTGAGCCGCTAATAATAGAAGAAGAGATAGCGGATCACGGAGTGCCGCCG
GAGATCGGTATGCCCGAAACGGCAGCGCCTGTTTCCGATATTCCGGAACCGGAAGCTGTCTCTGAAGAAATGCGTGAAGA
AAGAGTTCCGGTGATGTATCCGATCGGCCAAATGCACGGGACATATATTTTGGCCCAAAACGAAAACGGCTTGTATATCA
TTGACCAGCATGCGGCCCAAGAACGGATTAAATACGAATATTTCCGGGAAAAAGTCGGGCAGGTCGAGCCTGAAGTGCAG
GATATGATCGTGCCGCTCACTTTTCATTATGCGGCAAATGAAGCGCTGATCATTGACCAGCATCAGCATGAGCTTGAAAG
CGTCGGAGTATTTTTAGAAGCATTCGGCACGAACAGCTACATCGTCCGCTGCCATCCGGCCTGGTTTCCAAAAGGGGAAG
AAGCTGAACTGATTGAAGAAATCATTCAGCAGGTGCTTGACGCCAAACAGATCGATATTAAAAAACTGCGGGAGGAAGCG
GCCATTATGATGAGCTGCAAAGGCTCAATCAAAGCGAACCGCCATTTGCGAAACGACGAAATCAAAGCGCTCTTGGACGA
CCTGCGCCGAACGACAGACCCGTTCACATGCCCGCACGGCCGGCCGATCATTATCCACCACAGCACGTATGAGATGGAGA
AGATGTTTAAGCGTGTGATGTAA

Domains

Predicted by InterProScan.

MutL C terminal dimerisation domain (MutL_C)

(435-576)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(25-111)

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(209-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

46.384

100

0.476