Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   ACKFA7_RS05660 Genome accession   NZ_CP175553
Coordinates   1152155..1153315 (+) Length   386 a.a.
NCBI ID   WP_038457629.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 4-9-2     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 1147155..1158315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKFA7_RS05635 (ACKFA7_05635) - 1147902..1149089 (+) 1188 WP_079891810.1 putative glycoside hydrolase -
  ACKFA7_RS05640 (ACKFA7_05640) - 1149207..1149785 (+) 579 WP_007409110.1 GNAT family N-acetyltransferase -
  ACKFA7_RS05645 (ACKFA7_05645) spx 1149964..1150359 (+) 396 WP_003155034.1 transcriptional regulator Spx -
  ACKFA7_RS05650 (ACKFA7_05650) - 1150416..1151072 (-) 657 WP_007610610.1 TerC family protein -
  ACKFA7_RS05655 (ACKFA7_05655) mecA 1151348..1152004 (+) 657 WP_003155032.1 adaptor protein MecA Regulator
  ACKFA7_RS05660 (ACKFA7_05660) coiA 1152155..1153315 (+) 1161 WP_038457629.1 competence protein CoiA family protein Machinery gene
  ACKFA7_RS05665 (ACKFA7_05665) pepF 1153543..1155372 (+) 1830 WP_003155028.1 oligoendopeptidase F Regulator
  ACKFA7_RS05670 (ACKFA7_05670) - 1155410..1155577 (-) 168 WP_003155026.1 hypothetical protein -
  ACKFA7_RS05675 (ACKFA7_05675) spxH 1155863..1156765 (-) 903 WP_032874464.1 protease adaptor protein SpxH -
  ACKFA7_RS05680 (ACKFA7_05680) - 1156762..1157160 (-) 399 WP_007610618.1 thiol management oxidoreductase -
  ACKFA7_RS05685 (ACKFA7_05685) - 1157389..1158075 (-) 687 WP_038457632.1 lytic transglycosylase domain-containing protein -

Sequence


Protein


Download         Length: 386 a.a.        Molecular weight: 44416.20 Da        Isoelectric Point: 10.0426

>NTDB_id=965548 ACKFA7_RS05660 WP_038457629.1 1152155..1153315(+) (coiA) [Bacillus amyloliquefaciens strain 4-9-2]
MFSAVTADGRLIQLAGSYSKEKAAELRKKHWFCPVCKSELDIKLGREKLPHFAHKKSRLCPGESEPESEYHLEGKRQLFL
WLKTQGCSVSLEPYLTSAGQRPDLTAESGDERLAFEFQCANLSADSLKSRTAGLKNAGYRPVWIIGAKRLKRMAAQFFRL
SAFHWQFFEVNSFSSLLFYCPDARSFYRLHSITPFYTGYSYAGLTTIPLHKANLKDICHPEGRHSVRLPSWGRAVAGFRN
KSGRFLSEDAGLIRRLFYERHQVAFPFLPSEVFIPVSAGFVFASPVFVWQGHLYLRLAELSKKGAPIRLSGMVHDLRQKI
RHKEIRMRYGSQDSLIRMAVKQYADFLCLQDFLREIENEVYIPSSQRKLPQTAEELRRRDLLFFGE

Nucleotide


Download         Length: 1161 bp        

>NTDB_id=965548 ACKFA7_RS05660 WP_038457629.1 1152155..1153315(+) (coiA) [Bacillus amyloliquefaciens strain 4-9-2]
ATGTTCAGTGCTGTGACTGCCGATGGACGGCTCATTCAGCTGGCCGGAAGCTATTCAAAGGAAAAAGCGGCGGAGCTGAG
AAAGAAACACTGGTTCTGCCCCGTTTGCAAAAGTGAGCTTGATATCAAACTGGGACGGGAGAAACTGCCGCACTTCGCTC
ATAAAAAAAGCAGGCTGTGTCCCGGGGAATCCGAACCTGAAAGCGAATACCATCTTGAAGGAAAAAGACAGCTTTTTCTC
TGGCTCAAGACACAAGGGTGCAGTGTCAGCCTGGAACCGTATCTGACTTCCGCGGGACAGCGGCCTGACTTGACGGCAGA
AAGCGGAGACGAGAGGCTGGCTTTTGAATTTCAATGTGCGAACCTTTCGGCGGACTCTTTAAAGAGCCGGACGGCAGGCC
TGAAAAACGCCGGGTACCGGCCGGTCTGGATCATCGGGGCAAAACGGTTAAAACGGATGGCCGCGCAATTTTTCCGGCTT
TCTGCTTTTCACTGGCAGTTCTTTGAAGTCAATTCATTTTCCTCCTTACTGTTTTACTGCCCCGACGCCCGCTCCTTTTA
CAGGCTGCATTCCATCACTCCATTTTACACCGGCTATTCTTATGCCGGCTTAACCACAATCCCTCTTCACAAAGCAAACC
TGAAAGACATTTGTCATCCGGAAGGGCGGCACAGCGTCAGACTTCCCTCGTGGGGACGTGCCGTAGCCGGCTTCCGCAAC
AAAAGCGGGCGGTTTTTATCTGAAGATGCCGGTCTTATCCGGCGTCTTTTTTACGAAAGACATCAGGTTGCATTTCCATT
TCTCCCATCTGAAGTGTTTATTCCCGTTTCAGCGGGCTTTGTGTTTGCAAGTCCCGTTTTTGTGTGGCAGGGCCATTTAT
ACTTACGGCTTGCGGAACTTTCTAAAAAAGGCGCGCCGATCCGATTATCCGGCATGGTTCATGATTTACGGCAAAAAATC
AGGCATAAGGAGATCCGGATGCGGTATGGTTCCCAAGATAGCCTTATCAGAATGGCGGTAAAACAATATGCTGATTTCTT
ATGCTTGCAGGATTTTTTAAGGGAAATTGAGAATGAAGTATATATACCCTCATCTCAACGGAAGCTCCCTCAAACGGCAG
AAGAGCTGCGCCGGCGGGATCTGCTCTTTTTTGGGGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

45.745

97.409

0.446