Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   ACKFA7_RS05285 Genome accession   NZ_CP175553
Coordinates   1083434..1086826 (+) Length   1130 a.a.
NCBI ID   WP_038457548.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 4-9-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1078434..1091826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKFA7_RS05275 (ACKFA7_05275) addA 1078495..1082199 (+) 3705 WP_038460685.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  ACKFA7_RS05280 (ACKFA7_05280) sbcD 1082265..1083437 (+) 1173 WP_038457547.1 exonuclease subunit SbcD -
  ACKFA7_RS05285 (ACKFA7_05285) sbcC 1083434..1086826 (+) 3393 WP_038457548.1 exonuclease subunit SbcC Machinery gene
  ACKFA7_RS05290 (ACKFA7_05290) - 1086842..1087135 (+) 294 WP_038457549.1 hypothetical protein -
  ACKFA7_RS05295 (ACKFA7_05295) - 1087179..1087397 (-) 219 WP_003155143.1 spore germination protein -
  ACKFA7_RS05300 (ACKFA7_05300) - 1087437..1087832 (-) 396 WP_038457551.1 spore germination protein GerPE -
  ACKFA7_RS05305 (ACKFA7_05305) - 1087832..1088008 (-) 177 WP_003155141.1 hypothetical protein -
  ACKFA7_RS05310 (ACKFA7_05310) - 1088005..1088622 (-) 618 WP_003155139.1 spore germination protein GerPC -
  ACKFA7_RS05315 (ACKFA7_05315) - 1088658..1088894 (-) 237 WP_007409164.1 spore germination protein GerPB -
  ACKFA7_RS05320 (ACKFA7_05320) - 1088907..1089128 (-) 222 WP_003155135.1 spore germination protein -
  ACKFA7_RS05325 (ACKFA7_05325) - 1089318..1089533 (-) 216 WP_038457554.1 aspartyl-phosphate phosphatase Spo0E family protein -
  ACKFA7_RS05330 (ACKFA7_05330) - 1089751..1090656 (+) 906 WP_007409162.1 fumarylacetoacetate hydrolase family protein -
  ACKFA7_RS05335 (ACKFA7_05335) - 1090750..1091106 (+) 357 WP_007409161.1 YisL family protein -
  ACKFA7_RS05340 (ACKFA7_05340) - 1091103..1091336 (-) 234 WP_228842187.1 hypothetical protein -

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 128333.32 Da        Isoelectric Point: 5.5600

>NTDB_id=965540 ACKFA7_RS05285 WP_038457548.1 1083434..1086826(+) (sbcC) [Bacillus amyloliquefaciens strain 4-9-2]
MKPILLTIKGLHSFREEQTIDFAGLSGAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNHAEDQLAVSFTF
ALQSGHRVSYKVERVFKRTDETKVKTALCRLIEIKDEQTVLADKANEVNKKVEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRHMLQRLFNLEQYGDRLVKKLRRRAQEAAAKKNEMLAEQSGLGDAGEDALKQAEQQFHEANERLEAAEKKRVRAK
ERFENHQEIWNLQTERDEYERREKKLEERRPYITDLTERLKEAETALALEPYADRYTEAVRRKQRTEQEHELAKRKSEAE
TVSFTRQNEAYEAWRAHKAEQEPKLVKEEELYQRLSAIEQKLLEAKKEAEKTNAEHSKKEEEYEAASKQLAAVKDRLTRG
QNRQNELKEELKAVQVTADERKKCQTAAQLAAGFQQTQEQITKERANLTTQLKNMEKLNGESESLTAKAKTEEEDITRAY
QTLQTVYHMVCETERSLKAAAERADKTQADLRRRSEEARTAALTKELSEKLIEGKPCPVCGSTQHDRPRSAHETFSPDTA
VQEQLQQVEALLSEAAALSQEVLTAKVALEEQSGRFTEECPFLQSARVPELEAASSISGRPLDETFSAVRLEWKQMKQDM
LSVKEKVTRLISAHQQTVRQAEQLAERIRYEEKEADRLRHSLEELESLSESRLNQYNEVCGDIPPNRIDAWQASIDEKDR
QAEECEKRIETSIAFLKEHEEEKERLQEMKHRLERERLELHYASERLQQVIDGYEQELGTAAEETSISAKLEAVRQELQL
LKSKEQSLFDSLKQAQQSLNDAKGRESGSLMSLRDAETSLEKAQNDWRVRSKDTGFADPDQVKKSLLPQGRAEEMKKEID
EFLDTSKQLSANISRVTDKLAERRISEEEWTASVSLLKQAEAESGAAMEEKGAQAKAFAVMQKQHKRFKEIEAELKSWQT
QIDRLDKLQSVCKGNTFVEFLAEEQLESVARDASARLGALTRQRYAILVDSEGGFVMRDDANGGVKRPVSSLSGGETFLT
SLSLALALSAQIQLRGQYPLQFFFLDEGFGTLDQGLLDTVVTALEKLQSDNLSVGVISHVQELRARLPKKLIVHPSEPGG
KGTRVTLEIM

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=965540 ACKFA7_RS05285 WP_038457548.1 1083434..1086826(+) (sbcC) [Bacillus amyloliquefaciens strain 4-9-2]
ATGAAGCCGATTCTGTTAACGATAAAAGGGCTCCACAGTTTCAGGGAGGAACAGACCATTGATTTTGCCGGACTGTCAGG
AGCCGGGGTGTTCGGGATTTTCGGACCGACCGGAAGCGGAAAATCGTCGATCCTTGACGCCATGACACTCGCTTTATACG
GAAAAGTGGAGCGCGCCGCAAATAATACGCACGGCATCCTGAATCATGCCGAAGATCAGCTCGCCGTCTCATTTACATTC
GCGCTTCAATCCGGCCACCGGGTTTCCTACAAGGTCGAGCGCGTTTTTAAGAGAACGGATGAAACGAAAGTAAAAACCGC
CCTCTGCCGCCTGATTGAAATCAAAGACGAACAAACGGTGCTGGCCGATAAAGCGAATGAAGTGAACAAAAAGGTAGAGG
AGCTTCTTGGCCTGACCATTGACGACTTTACAAGAGCCGTCGTGCTGCCGCAAGGAAAGTTTGCCGAGTTTCTGTCGCTT
AAAGGCGCGGAAAGAAGACATATGCTCCAGCGCCTGTTTAATCTGGAACAGTACGGGGACAGGCTTGTCAAAAAATTGCG
GCGGCGGGCGCAGGAAGCGGCAGCGAAAAAAAATGAAATGCTGGCCGAACAATCCGGCCTCGGAGACGCAGGAGAAGATG
CGCTGAAGCAGGCTGAACAGCAGTTTCACGAAGCGAACGAACGGCTTGAAGCAGCTGAGAAGAAACGGGTCCGGGCAAAA
GAGCGTTTTGAGAATCACCAGGAAATTTGGAACCTGCAGACAGAAAGAGATGAATATGAGCGCCGGGAGAAAAAGCTTGA
GGAAAGACGCCCGTACATCACGGATTTGACTGAGCGTCTTAAAGAGGCGGAAACAGCTCTCGCCCTTGAGCCGTACGCAG
ACCGCTACACAGAAGCCGTCCGCCGGAAGCAGCGCACCGAACAGGAACACGAACTGGCCAAACGGAAATCAGAGGCGGAA
ACCGTTTCATTTACCCGGCAAAATGAAGCCTATGAAGCATGGCGGGCCCATAAGGCCGAACAGGAGCCGAAGCTTGTCAA
GGAAGAAGAGCTGTATCAAAGACTTTCAGCCATTGAACAAAAACTGCTTGAAGCGAAAAAAGAAGCGGAAAAAACAAATG
CGGAACACAGCAAAAAAGAGGAAGAATACGAAGCCGCCTCGAAACAGCTGGCCGCAGTGAAAGACCGCCTGACCCGCGGC
CAAAACAGGCAGAATGAGCTGAAAGAAGAGCTGAAAGCAGTTCAAGTCACCGCCGATGAACGGAAAAAATGCCAGACCGC
AGCACAGCTGGCGGCGGGCTTTCAGCAGACACAGGAACAAATCACGAAAGAACGGGCCAATCTGACAACGCAGCTGAAAA
ACATGGAGAAGCTGAACGGAGAAAGCGAGTCGCTCACAGCGAAAGCGAAAACGGAAGAGGAAGACATTACGCGCGCTTAT
CAAACGCTTCAAACCGTTTACCATATGGTCTGTGAAACGGAACGTTCACTGAAAGCCGCAGCCGAACGGGCTGACAAAAC
GCAAGCCGATCTCCGCAGGCGCTCAGAGGAAGCGAGAACGGCTGCATTAACAAAAGAATTATCGGAAAAACTAATCGAAG
GAAAGCCTTGTCCTGTATGCGGCTCAACGCAGCATGACCGCCCGCGATCCGCTCATGAAACATTCTCGCCTGATACAGCT
GTACAGGAACAGTTGCAGCAGGTTGAAGCGCTGCTTTCTGAGGCGGCGGCTCTTTCTCAGGAAGTGCTGACAGCCAAGGT
TGCATTAGAAGAACAGTCGGGGCGTTTTACCGAAGAATGTCCATTTCTGCAAAGCGCCCGGGTTCCGGAGCTGGAAGCCG
CTTCTTCCATCAGCGGACGCCCGCTTGATGAAACGTTCAGCGCCGTCCGCTTGGAATGGAAACAAATGAAACAGGATATG
CTGTCGGTAAAAGAGAAGGTCACAAGACTGATCAGCGCGCATCAGCAGACGGTGAGACAAGCTGAGCAGCTTGCCGAACG
AATCCGCTACGAGGAAAAAGAAGCCGACCGTCTCAGACATTCATTAGAAGAGCTTGAATCGCTGTCAGAAAGCCGATTGA
ATCAGTACAACGAAGTCTGCGGTGATATTCCGCCAAACCGGATTGACGCCTGGCAGGCTTCGATAGATGAGAAGGACAGG
CAGGCAGAAGAATGTGAGAAGCGCATTGAAACAAGCATCGCATTCCTCAAGGAACATGAAGAGGAGAAAGAACGCCTGCA
GGAGATGAAGCATCGGCTTGAACGGGAACGGCTCGAGCTTCACTATGCGTCTGAGCGCCTGCAGCAGGTGATTGACGGAT
ATGAACAAGAGCTCGGAACAGCAGCTGAAGAAACATCAATTTCCGCAAAGCTTGAAGCGGTGCGGCAGGAATTACAGCTG
TTAAAATCGAAAGAACAGTCCTTATTCGACTCGCTGAAGCAGGCGCAGCAATCACTGAATGACGCAAAAGGCCGGGAATC
CGGCAGTCTCATGTCACTCAGGGATGCTGAGACTTCCCTTGAGAAAGCGCAAAACGACTGGCGCGTGAGGTCAAAAGACA
CCGGGTTTGCCGACCCGGACCAAGTCAAAAAAAGTCTGCTTCCGCAAGGGCGTGCAGAGGAAATGAAAAAAGAAATTGAT
GAGTTCCTGGACACCTCAAAACAGCTATCGGCAAATATCAGCCGTGTTACTGATAAATTAGCCGAGCGCCGGATATCGGA
GGAAGAATGGACAGCATCCGTTTCTCTGCTGAAGCAGGCAGAGGCTGAGTCAGGCGCCGCCATGGAGGAAAAAGGAGCAC
AGGCAAAAGCCTTCGCGGTTATGCAAAAACAGCATAAGCGCTTTAAAGAGATTGAAGCCGAACTGAAAAGCTGGCAGACA
CAGATTGACAGGCTTGATAAGCTCCAGTCTGTATGTAAAGGCAATACATTCGTCGAATTTTTAGCGGAAGAACAGCTGGA
AAGCGTGGCTCGGGACGCCTCTGCCCGTCTCGGAGCGCTGACAAGGCAGCGGTATGCCATATTAGTCGATTCAGAAGGCG
GTTTCGTCATGCGTGATGACGCGAACGGAGGCGTCAAACGGCCCGTATCAAGCCTTTCCGGCGGGGAGACGTTTCTGACA
TCGCTGTCGCTTGCGCTTGCCTTGTCCGCCCAGATTCAGCTGCGGGGGCAATACCCGCTGCAATTCTTTTTCTTAGATGA
AGGATTCGGGACTCTTGACCAAGGGCTCTTAGACACCGTTGTCACAGCGCTCGAAAAGCTGCAATCGGACAACTTATCCG
TCGGAGTGATCAGCCATGTGCAGGAGCTGAGAGCGCGTCTGCCGAAAAAATTAATCGTTCATCCGTCCGAACCGGGCGGG
AAAGGCACCCGGGTCACATTGGAGATCATGTAG

Domains

Predicted by InterProScan.

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1017-1085)

AAA domain (AAA_23)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

64.248

100

0.642