Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   ACKFA7_RS03795 Genome accession   NZ_CP175553
Coordinates   798550..799266 (+) Length   238 a.a.
NCBI ID   WP_012117069.1    Uniprot ID   A7Z2F7
Organism   Bacillus amyloliquefaciens strain 4-9-2     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 793550..804266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKFA7_RS03765 (ACKFA7_03765) - 793730..794107 (+) 378 WP_007610033.1 DUF1992 domain-containing protein -
  ACKFA7_RS03770 (ACKFA7_03770) - 794117..794548 (-) 432 WP_003155596.1 Hsp20/alpha crystallin family protein -
  ACKFA7_RS03775 (ACKFA7_03775) - 794564..794806 (-) 243 WP_003155595.1 spore germination protein -
  ACKFA7_RS03780 (ACKFA7_03780) - 794821..795081 (-) 261 WP_014417185.1 spore germination protein -
  ACKFA7_RS03785 (ACKFA7_03785) treP 795352..796767 (+) 1416 WP_046702353.1 PTS system trehalose-specific EIIBC component -
  ACKFA7_RS03790 (ACKFA7_03790) treC 796843..798528 (+) 1686 WP_108654890.1 alpha,alpha-phosphotrehalase -
  ACKFA7_RS03795 (ACKFA7_03795) treR 798550..799266 (+) 717 WP_012117069.1 trehalose operon repressor Regulator
  ACKFA7_RS03800 (ACKFA7_03800) - 799400..800065 (+) 666 WP_003155588.1 NAD(P)H-dependent oxidoreductase -
  ACKFA7_RS03805 (ACKFA7_03805) - 800101..800862 (-) 762 WP_038457282.1 YibE/F family protein -
  ACKFA7_RS03810 (ACKFA7_03810) - 800859..801998 (-) 1140 WP_038457284.1 YibE/F family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27484.50 Da        Isoelectric Point: 7.3803

>NTDB_id=965525 ACKFA7_RS03795 WP_012117069.1 798550..799266(+) (treR) [Bacillus amyloliquefaciens strain 4-9-2]
MKVNKYITIYKDMVRQIESGQRKAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETRTTVHRLGLILPPSEAAKELGTEADEKVWEVVRSRRIDGEHIILDKDYFVKKHVPLLTKAICEDS
IYEYLEGELGLSISYAQKEIVVEPAGEEDRKYLDLGGFSHMAVVKNRVFLEDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=965525 ACKFA7_RS03795 WP_012117069.1 798550..799266(+) (treR) [Bacillus amyloliquefaciens strain 4-9-2]
ATGAAAGTGAATAAATACATCACAATCTATAAAGATATGGTGCGGCAGATCGAAAGCGGCCAGCGGAAGGCTGAAGACGT
TCTTCCGTCTGAAAATGATTTGTGCGATCAATATGGCACATCACGAGAAACCGTCCGCAAAGCCCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGTTTTCCCGTCTCAGGC
CTGATCAGCTTCAAAGAGCTTTCGGAAACGCTCGGAAAAGAGACGAGAACGACGGTTCACCGTCTCGGGCTGATCCTGCC
TCCCTCAGAAGCCGCAAAAGAGCTTGGTACAGAAGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGACGGATTGACG
GAGAACATATTATTTTGGACAAGGATTACTTTGTGAAAAAACACGTGCCTCTATTGACAAAGGCGATTTGTGAAGATTCG
ATCTATGAGTATCTCGAAGGAGAGCTCGGCTTGTCCATCAGCTACGCGCAAAAGGAAATTGTCGTGGAGCCGGCGGGGGA
AGAGGACCGGAAGTATTTGGATCTCGGCGGATTCAGTCATATGGCGGTCGTGAAAAACCGCGTCTTTTTGGAGGATACCA
GCCTCTTTCAGTACACGGAAAGCCGGCACAGGCTCGATAAATTCCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(6-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z2F7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.797

99.16

0.424