Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NSQ84_RS05235 Genome accession   NZ_CP150188
Coordinates   1074724..1076541 (+) Length   605 a.a.
NCBI ID   WP_144596605.1    Uniprot ID   -
Organism   Aeribacillus sp. FSL K6-3256     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1069724..1081541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ84_RS05215 (NSQ84_05215) - 1069939..1070595 (-) 657 WP_327873969.1 TerC family protein -
  NSQ84_RS05220 (NSQ84_05220) mecA 1070864..1071526 (+) 663 WP_063387000.1 adaptor protein MecA -
  NSQ84_RS05225 (NSQ84_05225) cls 1071646..1073157 (+) 1512 WP_339212309.1 cardiolipin synthase -
  NSQ84_RS05230 (NSQ84_05230) - 1073446..1074639 (+) 1194 WP_339212310.1 competence protein CoiA family protein -
  NSQ84_RS05235 (NSQ84_05235) pepF 1074724..1076541 (+) 1818 WP_144596605.1 oligoendopeptidase F Regulator
  NSQ84_RS05240 (NSQ84_05240) - 1076712..1076885 (-) 174 WP_162536160.1 hypothetical protein -
  NSQ84_RS05245 (NSQ84_05245) - 1077257..1078117 (-) 861 WP_232515740.1 ClpXP adapter SpxH family protein -
  NSQ84_RS05250 (NSQ84_05250) - 1078131..1078541 (-) 411 WP_063387493.1 hypothetical protein -
  NSQ84_RS05255 (NSQ84_05255) - 1078839..1079441 (-) 603 WP_082830278.1 lytic transglycosylase domain-containing protein -
  NSQ84_RS05260 (NSQ84_05260) - 1079441..1080031 (-) 591 WP_144596603.1 CYTH domain-containing protein -
  NSQ84_RS05265 (NSQ84_05265) - 1080144..1080512 (+) 369 WP_130157355.1 hypothetical protein -
  NSQ84_RS05270 (NSQ84_05270) - 1080525..1081154 (+) 630 WP_063387496.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 70020.70 Da        Isoelectric Point: 4.8668

>NTDB_id=965522 NSQ84_RS05235 WP_144596605.1 1074724..1076541(+) (pepF) [Aeribacillus sp. FSL K6-3256]
MGNETAVKRLPKREEIPVEYTWRLEDIFASDDEWEKEFEEVKQLIPKIGEYRGKLGQSSDLLYEALSYQDSVMERLGKLY
TYAHMRYDQDTTNSFYQGLNDRAANLYTQASSLSSYIVPEILSIEEEKLQQFLKENDQLKLYAHALDEINRQRPHVLDAE
QEAILAQAAEALSTASNTFGKLNNADLEFPAIKDENGEEVEITHGRYIQFLESENRRVRRDAFQALYATYGKFKNTFAST
LSGAVKKNNFYAKVRKYENARQAALSANNIPEEVYDNLVKTINEHLPLLHRYVDLRKKALKLDELHMYDLYTPLVQNVDL
KITYEEAKDIVLKGLAPLGEEYVGILQEGFENRWIDVKENKGKRSGAYSSGAYGTNPYILLNWQDNVNNLFTLVHELGHS
VHSYYTRKTQPYPYGDYSIFVAEVASTCNENLLNEYLLNTIDDEKKRLYLLNHFLEGFRGTVFRQTMFAEFEHYIHLKAQ
NGEPLTPEFLTQTYYELNKKYFGDNIVVDEEIGLEWARIPHFYYNFYVYQYATGFSAASALSKQILSEGETAVERYINFL
KAGSSDYPINVLKKAGVDMTSTKPIEDACKVFEEKLTEMEELLLK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=965522 NSQ84_RS05235 WP_144596605.1 1074724..1076541(+) (pepF) [Aeribacillus sp. FSL K6-3256]
ATGGGCAATGAAACAGCTGTCAAAAGGCTGCCAAAACGGGAAGAAATCCCTGTTGAGTATACTTGGCGGCTAGAAGATAT
TTTTGCTTCTGATGATGAATGGGAAAAAGAATTTGAAGAAGTAAAGCAGCTAATTCCAAAAATCGGTGAATATAGAGGAA
AATTAGGTCAATCCTCCGATCTGTTATATGAGGCGCTCTCTTATCAAGATTCCGTGATGGAGAGGCTTGGAAAGCTTTAT
ACATATGCCCATATGCGCTACGATCAAGATACAACTAATTCTTTTTATCAAGGATTGAATGACCGGGCAGCAAATCTTTA
TACACAAGCTTCCAGCCTCTCATCCTATATCGTTCCGGAAATACTATCCATTGAAGAAGAAAAGCTTCAGCAATTTTTGA
AAGAAAATGATCAATTGAAGCTTTATGCACATGCCTTGGACGAAATCAACCGGCAAAGACCGCACGTGCTCGATGCGGAG
CAAGAGGCTATTTTAGCTCAAGCTGCGGAAGCCCTGAGCACTGCCTCCAATACGTTTGGAAAATTAAATAATGCGGACTT
GGAATTTCCAGCAATTAAGGATGAAAATGGAGAAGAAGTGGAAATCACTCACGGCCGTTATATCCAGTTTTTGGAGAGTG
AAAATAGACGAGTCCGTCGCGATGCGTTCCAGGCATTATACGCAACATATGGAAAATTTAAAAATACGTTTGCCAGCACA
TTAAGCGGAGCTGTTAAGAAAAATAATTTTTATGCGAAGGTGCGGAAATATGAGAATGCCCGCCAGGCTGCACTAAGCGC
CAACAACATTCCCGAGGAAGTCTACGACAATTTAGTAAAAACGATCAATGAACATTTGCCGCTGCTCCATCGTTATGTCG
ATTTGCGGAAAAAAGCGCTGAAGCTTGATGAACTTCATATGTATGATCTTTATACGCCGCTTGTACAAAACGTCGATTTG
AAAATCACGTATGAAGAAGCGAAAGACATCGTATTGAAGGGGCTTGCTCCATTAGGTGAAGAATATGTCGGCATTTTACA
AGAAGGCTTTGAAAACAGATGGATTGACGTTAAGGAGAATAAAGGGAAACGAAGCGGAGCTTACTCCTCTGGCGCCTATG
GAACAAATCCATATATTTTGCTGAATTGGCAAGATAATGTGAACAATTTATTCACACTTGTTCACGAGCTTGGCCATTCG
GTGCACAGCTACTATACAAGAAAAACACAGCCGTATCCGTACGGAGATTATTCTATTTTTGTCGCGGAAGTGGCTTCTAC
ATGCAATGAAAACTTGTTAAATGAATATTTGCTCAACACGATCGATGATGAAAAGAAACGTTTATACTTGCTGAATCATT
TCCTTGAAGGGTTTAGAGGAACGGTATTCCGGCAAACGATGTTTGCTGAGTTTGAACATTATATCCATTTGAAGGCGCAA
AACGGAGAGCCGCTCACACCGGAATTTTTGACGCAAACGTATTATGAGTTAAACAAAAAATATTTTGGTGACAACATTGT
GGTCGATGAAGAAATAGGCTTAGAATGGGCAAGAATTCCGCATTTTTATTACAATTTTTACGTTTATCAATACGCAACAG
GCTTTAGTGCTGCAAGCGCCTTGAGCAAGCAGATTTTATCGGAAGGAGAAACTGCCGTTGAAAGGTACATTAATTTCTTG
AAAGCGGGAAGCTCTGATTATCCGATTAATGTGCTGAAAAAAGCAGGGGTCGATATGACATCAACCAAGCCGATTGAAGA
TGCTTGCAAAGTATTTGAAGAAAAGCTGACGGAGATGGAGGAGCTGCTGTTAAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(210-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.265

98.017

0.502

Multiple sequence alignment