Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   ACKFA7_RS02060 Genome accession   NZ_CP175553
Coordinates   403496..403930 (+) Length   144 a.a.
NCBI ID   WP_007410180.1    Uniprot ID   A7Z1H0
Organism   Bacillus amyloliquefaciens strain 4-9-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 398496..408930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKFA7_RS02030 (ACKFA7_02030) - 399170..400030 (+) 861 WP_038456980.1 SDR family oxidoreductase -
  ACKFA7_RS02035 (ACKFA7_02035) - 400043..400546 (+) 504 WP_038456982.1 D-lyxose/D-mannose family sugar isomerase -
  ACKFA7_RS02040 (ACKFA7_02040) - 400634..401257 (+) 624 WP_038456983.1 GNAT family N-acetyltransferase -
  ACKFA7_RS02045 (ACKFA7_02045) - 401264..401686 (+) 423 WP_003156270.1 pyridoxamine 5'-phosphate oxidase family protein -
  ACKFA7_RS02050 (ACKFA7_02050) - 402184..402993 (+) 810 WP_007609475.1 lipid II flippase Amj family protein -
  ACKFA7_RS02055 (ACKFA7_02055) - 403031..403321 (-) 291 WP_003156265.1 DUF3817 domain-containing protein -
  ACKFA7_RS02060 (ACKFA7_02060) lrpC 403496..403930 (+) 435 WP_007410180.1 Lrp/AsnC family transcriptional regulator Machinery gene
  ACKFA7_RS02065 (ACKFA7_02065) - 403994..406180 (+) 2187 WP_038460655.1 DNA topoisomerase III -
  ACKFA7_RS02070 (ACKFA7_02070) - 406414..407499 (+) 1086 WP_038456985.1 hypothetical protein -
  ACKFA7_RS02075 (ACKFA7_02075) - 407480..408328 (+) 849 WP_032872939.1 diguanylate cyclase domain-containing protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16492.13 Da        Isoelectric Point: 8.6776

>NTDB_id=965520 ACKFA7_RS02060 WP_007410180.1 403496..403930(+) (lrpC) [Bacillus amyloliquefaciens strain 4-9-2]
MKLDNVDLSIIKELQRDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLPVSCIVEATVKNGKYDQ
FKTYIQSIPNIEFCFRVAGAACYMLKMNADSLETIEHFINRTSPYAQTVTHVIFSEIDTKNVLD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=965520 ACKFA7_RS02060 WP_007410180.1 403496..403930(+) (lrpC) [Bacillus amyloliquefaciens strain 4-9-2]
ATGAAACTAGATAATGTTGATCTGAGCATCATTAAAGAGCTGCAGCGGGACAGCCGCCTGTCCATGCGGGAGCTTGGCAG
AAAAATCAAATTGTCAGCCCCGTCCGTCACAGAGCGTGTCAGACAGCTTGAATCTTTCGGCGTTATTAAGCGCTATACAT
TGGACATTGATCAAAAAAAGATCGGGCTTCCCGTCTCCTGCATTGTCGAAGCGACGGTGAAAAACGGAAAATACGATCAA
TTCAAAACCTACATTCAATCCATTCCCAACATTGAATTTTGTTTTCGGGTCGCCGGGGCGGCGTGTTATATGCTGAAGAT
GAACGCGGACAGCCTGGAAACGATCGAACACTTCATTAACCGCACCTCTCCGTATGCCCAAACCGTGACCCACGTCATTT
TCTCAGAAATTGACACAAAAAACGTCCTCGATTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(69-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z1H0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

80.851

97.917

0.792

Multiple sequence alignment