Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACJKII_RS27620 Genome accession   NZ_CP174606
Coordinates   5953484..5954977 (+) Length   497 a.a.
NCBI ID   WP_408082931.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain SKYC.SG.Lo     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5948484..5959977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJKII_RS27590 (ACJKII_27590) - 5948627..5949541 (-) 915 WP_003118059.1 fimbrial protein -
  ACJKII_RS27595 (ACJKII_27595) sutA 5949956..5950273 (-) 318 WP_003098240.1 transcriptional regulator SutA -
  ACJKII_RS27600 (ACJKII_27600) - 5950351..5950776 (-) 426 WP_003096441.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ACJKII_RS27605 (ACJKII_27605) - 5951037..5952365 (-) 1329 WP_003109815.1 ammonium transporter -
  ACJKII_RS27610 (ACJKII_27610) glnK 5952405..5952743 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  ACJKII_RS27615 (ACJKII_27615) - 5953183..5953443 (+) 261 WP_003096478.1 accessory factor UbiK family protein -
  ACJKII_RS27620 (ACJKII_27620) comM 5953484..5954977 (+) 1494 WP_408082931.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACJKII_RS27625 (ACJKII_27625) betT 5955102..5957087 (+) 1986 WP_003096496.1 choline BCCT transporter BetT -
  ACJKII_RS27630 (ACJKII_27630) pchP 5957130..5958179 (-) 1050 WP_003110458.1 phosphorylcholine phosphatase -
  ACJKII_RS27635 (ACJKII_27635) - 5958330..5959247 (-) 918 WP_003098255.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53099.08 Da        Isoelectric Point: 7.9587

>NTDB_id=965488 ACJKII_RS27620 WP_408082931.1 5953484..5954977(+) (comM) [Pseudomonas aeruginosa strain SKYC.SG.Lo]
MSLAIVHSRAQVGVEAPCVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGTALDGLECLGELALSGAIRPVRGVLPAALAARDARRVLVVPKENAEEASLASGLTVFAVDHL
LEIAGHLSGQAPLPPYQARGLLRAPFLYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPALDE
DEALEVAAIHSVASHVPLRHWPQRPFRQPHHSASAPALVGGGSRPQPGEITLAHQGVLFLDELPEFERKVLEVLREPLES
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPLLDRIDLHVSVLRESTSLQPGHGE
TATAEVSERVGAARQRQLARQGCANAHLDLQAMHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLERIDAI
ERRHLAEALQYRAMTST

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=965488 ACJKII_RS27620 WP_408082931.1 5953484..5954977(+) (comM) [Pseudomonas aeruginosa strain SKYC.SG.Lo]
ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCCCCCTGCGTCAGCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC
TCAATGCCGGTTTCGACTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTGCCCAAGGACGGCGGTCGC
TTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTGCCCGGCACCGCCCTCGACGGCCTGGAGTGCCT
CGGCGAACTGGCCCTGTCCGGGGCGATCCGGCCAGTGCGAGGCGTATTGCCGGCCGCGCTGGCGGCGCGCGACGCAAGGC
GCGTTCTGGTGGTACCGAAGGAAAATGCCGAAGAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTG
CTGGAGATCGCCGGACACCTCTCCGGCCAGGCCCCGCTGCCGCCCTACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCT
TTATCCAGACCTGGCCGAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACC
TGTTGCTCAGCGGCCCGCCGGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAG
GACGAAGCCCTGGAGGTCGCGGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAGGCACTGGCCGCAGCGACCGTTCCG
CCAGCCGCACCACTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGCGAGATCACCCTGGCGC
ACCAGGGCGTGCTGTTCCTCGACGAACTGCCGGAGTTCGAGCGCAAGGTCCTGGAGGTCCTGCGCGAGCCGCTGGAAAGC
GGCGAGATCGTCATTGCCCGGGCCAACGGCCGGGTACGTTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTG
TCCCTGTGGCTACCTCGGCGATCCCAGTGGCCGCTGCCGCTGCACCCCGGAACAGGTCCAGCGCTACCGGGGCAAGCTGT
CCGGACCGCTGCTCGATCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGGACACGGCGAA
ACCGCTACCGCCGAGGTCAGCGAACGGGTGGGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCA
TCTCGATCTCCAGGCGATGCACCGCAATTGTGCACTCGCCGAAGCGGACCGCCGCTGGCTGGAGGCTGCCGGAGAGCGCC
TGGAACTTTCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC
GAACGCCGGCACCTGGCGGAAGCCCTGCAGTATCGGGCAATGACCTCCACGTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.186

100

0.567
  comM Vibrio campbellii strain DS40M4

56.74

100

0.567
  comM Vibrio cholerae O1 biovar El Tor strain E7946

56.338

100

0.563
  comM Vibrio cholerae strain A1552

56.338

100

0.563
  comM Glaesserella parasuis strain SC1401

55.179

100

0.557
  comM Acinetobacter baylyi ADP1

53.521

100

0.535
  comM Legionella pneumophila str. Paris

49.798

99.799

0.497
  comM Legionella pneumophila strain ERS1305867

49.798

99.799

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.047

100

0.469
  comM Helicobacter pylori 26695

38.845

100

0.392

Multiple sequence alignment