Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   NSQ22_RS13485 Genome accession   NZ_CP150187
Coordinates   2642767..2645124 (-) Length   785 a.a.
NCBI ID   WP_171355463.1    Uniprot ID   -
Organism   Geobacillus sp. FSL K6-3411     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2637767..2650124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ22_RS13460 (NSQ22_13460) ahpC 2638256..2638819 (-) 564 WP_008881033.1 alkyl hydroperoxide reductase subunit C -
  NSQ22_RS13465 (NSQ22_13465) - 2639177..2639350 (-) 174 WP_008881034.1 hypothetical protein -
  NSQ22_RS13470 (NSQ22_13470) dtd 2639429..2639887 (-) 459 WP_008881035.1 D-aminoacyl-tRNA deacylase -
  NSQ22_RS13475 (NSQ22_13475) - 2639910..2642108 (-) 2199 WP_011887887.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  NSQ22_RS13480 (NSQ22_13480) - 2642255..2642767 (-) 513 WP_008881037.1 adenine phosphoribosyltransferase -
  NSQ22_RS13485 (NSQ22_13485) recJ 2642767..2645124 (-) 2358 WP_171355463.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  NSQ22_RS13490 (NSQ22_13490) - 2645182..2646084 (-) 903 WP_172437891.1 cation diffusion facilitator family transporter -
  NSQ22_RS13495 (NSQ22_13495) secDF 2646230..2648482 (-) 2253 WP_171355459.1 protein translocase subunit SecDF -
  NSQ22_RS13500 (NSQ22_13500) - 2648602..2648892 (-) 291 WP_011887891.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 86763.21 Da        Isoelectric Point: 5.2166

>NTDB_id=965488 NSQ22_RS13485 WP_171355463.1 2642767..2645124(-) (recJ) [Geobacillus sp. FSL K6-3411]
MLKAKTRWEVDCPDEQTVRRLAEEADIAPLLAKLLVRRGVRTAAEAAAFLDPLGQPFHDPFLLDGMERAVRRLERAINTG
ELVLVYGDYDADGVCSTSVMVSALKEAGASVEFYIPNRFTEGYGPNLAAFRAAKERGVSVIVTVDNGIAAVDEIAAANEW
GLDVIVTDHHEPGPVLPEAYAIIHPKKPGSTYPFRDLAGVGVAFKVAHALLGRVPRHLLDLVAIGTIADLVPLVGENRLL
AAQGLEALRETNRVGLRALWRQCRIDAMTVNEQTVGFAIAPRLNAAGRLGGADPAVALLMTDDEGEAARLAQEMDELNRE
RQQLVAQMAEEAAEMVRRQFPPEEHRVLVVAGEGWNPGVVGIVASKLVEQFYRPAVVLSMDREKGIAKGSARSIHGFDLF
ASLSQCRDILPHFGGHPMAAGMTLALDDVEELRERLNAIAARTLSDDDFTPPTFIDAACSVDELTLSAARSFERLAPFGV
SNPRPLLLIEEVAVETMRRVGANGAHMKAVFSQNGAAIDAIGFGLGPLCEEIAPGACVSAVGELSVNEWNGLAKPQLSLC
DVAVSSCQVFDVRGCRDVHPLIERMPKEKRLLVLFRRETENQLNLTAFRDELHYVASDEEAGALAIDGRYVVLLDLPPKL
RRLAVLLGNGQPERIYAVFAQPEAQFFRTFPTRDHFKWFYAFLHKYRSFPLAERGGQLARARGWTEETVHFMAKVFLELE
FIREQDGVISLVHAPEKRDLHESPTYRRRRDELEVEQQLLYSTYEQLKRCLAEMTRSQTYEEANV

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=965488 NSQ22_RS13485 WP_171355463.1 2642767..2645124(-) (recJ) [Geobacillus sp. FSL K6-3411]
ATGTTAAAAGCGAAAACGCGTTGGGAAGTAGATTGCCCCGACGAACAGACGGTGAGGCGGCTGGCCGAGGAAGCCGACAT
CGCGCCGTTGTTAGCAAAGCTTCTTGTCCGCCGTGGCGTGCGGACGGCAGCGGAAGCGGCCGCGTTTCTTGATCCCCTTG
GACAGCCGTTTCATGATCCGTTTCTACTTGATGGGATGGAACGGGCGGTTCGGCGCTTAGAGCGGGCGATCAACACCGGC
GAACTTGTGCTTGTCTATGGCGACTATGATGCCGATGGCGTCTGCAGTACGTCGGTGATGGTGAGCGCCCTTAAAGAGGC
GGGAGCGTCGGTCGAATTCTACATTCCCAATCGCTTTACGGAAGGATACGGTCCGAATCTGGCGGCATTTCGTGCCGCGA
AAGAGCGGGGCGTGTCCGTTATTGTGACGGTCGACAATGGAATTGCAGCGGTCGATGAAATCGCTGCCGCTAATGAGTGG
GGGCTTGATGTCATTGTGACCGACCACCATGAACCGGGTCCGGTGTTACCGGAGGCGTACGCGATCATTCATCCGAAAAA
GCCGGGAAGTACATACCCGTTTCGCGATTTGGCCGGCGTCGGCGTCGCATTTAAAGTTGCTCATGCGTTGCTTGGACGGG
TGCCGCGCCATTTGCTTGATTTGGTAGCGATCGGGACGATTGCCGACTTAGTGCCGCTCGTTGGGGAAAACCGTCTGCTC
GCCGCACAAGGGCTCGAGGCGCTGCGCGAAACGAACCGCGTTGGGTTGCGCGCCCTTTGGCGGCAATGCCGTATTGATGC
GATGACAGTAAATGAACAGACGGTCGGTTTTGCTATCGCGCCGCGGCTGAATGCGGCCGGCCGCCTCGGCGGCGCCGATC
CGGCCGTGGCGCTGTTAATGACAGACGATGAGGGCGAAGCCGCACGGTTGGCCCAAGAAATGGATGAACTAAACCGTGAA
CGCCAGCAGCTTGTGGCGCAAATGGCTGAAGAAGCGGCAGAGATGGTACGGCGTCAGTTTCCGCCTGAAGAGCATCGCGT
TCTTGTTGTCGCGGGTGAAGGATGGAATCCGGGGGTTGTTGGCATCGTTGCCTCGAAACTTGTTGAGCAGTTTTATCGTC
CAGCGGTTGTGCTTTCGATGGATCGGGAAAAAGGAATCGCCAAAGGGTCGGCTCGCAGCATTCACGGCTTTGACCTCTTT
GCAAGTTTATCGCAATGTCGTGACATTTTGCCTCATTTTGGTGGCCATCCGATGGCGGCGGGAATGACCTTAGCGCTTGA
TGATGTCGAAGAACTGCGGGAGCGGTTGAATGCCATCGCCGCTAGGACGTTGTCAGATGATGATTTTACACCGCCGACGT
TTATTGATGCTGCCTGCTCTGTTGATGAGCTGACGTTGTCGGCCGCGCGCAGCTTTGAGCGGCTTGCCCCGTTTGGTGTC
AGCAATCCGCGGCCGCTTCTTCTTATTGAAGAGGTGGCGGTTGAAACGATGCGCCGCGTCGGAGCGAACGGCGCCCATAT
GAAAGCGGTCTTTTCCCAAAATGGTGCAGCGATTGATGCCATTGGCTTCGGTCTCGGGCCGCTTTGCGAGGAGATCGCCC
CTGGGGCGTGCGTCTCGGCCGTCGGAGAGCTTTCGGTAAATGAATGGAACGGGTTAGCGAAGCCGCAGTTGTCGTTATGT
GATGTAGCGGTAAGCAGCTGCCAAGTGTTTGATGTCCGCGGCTGCCGCGATGTCCACCCGCTTATTGAGCGAATGCCGAA
AGAGAAACGGCTGCTTGTCCTGTTTCGCCGCGAAACCGAAAATCAATTAAATTTGACGGCGTTTCGCGACGAACTTCATT
ATGTAGCAAGTGATGAAGAGGCGGGCGCCTTGGCGATTGACGGCCGCTATGTCGTGCTGCTTGACTTGCCGCCAAAGCTC
CGCCGACTCGCTGTCTTGCTTGGCAACGGGCAGCCGGAGCGCATTTACGCGGTGTTTGCGCAGCCGGAAGCGCAGTTTTT
TCGCACGTTTCCGACGCGCGACCATTTTAAATGGTTTTATGCCTTTTTGCATAAATACCGTTCGTTTCCGCTCGCCGAGC
GGGGCGGACAGCTGGCGCGCGCCCGTGGCTGGACGGAAGAGACGGTTCATTTTATGGCGAAAGTATTTTTAGAGCTTGAG
TTTATTCGCGAACAAGACGGCGTCATCTCACTTGTCCATGCGCCAGAGAAGCGTGATTTGCATGAATCACCGACATATCG
CCGCCGGCGGGACGAGCTTGAGGTGGAACAGCAGTTATTATATTCCACTTATGAGCAGTTGAAACGCTGTTTAGCAGAAA
TGACACGTTCGCAAACGTACGAGGAGGCAAACGTATAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(83-226)

RecJ OB domain (RecJ_OB)

(455-560)

DHHA1 domain (DHHA1)

(311-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.257

99.745

0.531

Multiple sequence alignment