Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NSQ22_RS12485 Genome accession   NZ_CP150187
Coordinates   2458177..2459898 (-) Length   573 a.a.
NCBI ID   WP_171355466.1    Uniprot ID   -
Organism   Geobacillus sp. FSL K6-3411     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2453177..2464898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ22_RS12455 (NSQ22_12455) - 2453645..2453893 (+) 249 WP_008879793.1 DUF2627 domain-containing protein -
  NSQ22_RS12460 (NSQ22_12460) - 2453897..2454631 (-) 735 WP_011887777.1 glycerophosphodiester phosphodiesterase -
  NSQ22_RS12465 (NSQ22_12465) - 2454740..2454892 (+) 153 WP_078172643.1 YycC family protein -
  NSQ22_RS12470 (NSQ22_12470) - 2455033..2455452 (+) 420 WP_029761059.1 hypothetical protein -
  NSQ22_RS12475 (NSQ22_12475) spo0A 2455584..2456417 (-) 834 WP_087960146.1 sporulation transcription factor Spo0A -
  NSQ22_RS12480 (NSQ22_12480) spoIVB 2456655..2457950 (-) 1296 WP_081157287.1 SpoIVB peptidase -
  NSQ22_RS12485 (NSQ22_12485) recN 2458177..2459898 (-) 1722 WP_171355466.1 DNA repair protein RecN Machinery gene
  NSQ22_RS12490 (NSQ22_12490) argR 2460041..2460490 (-) 450 WP_008879800.1 transcriptional regulator ArgR -
  NSQ22_RS12495 (NSQ22_12495) - 2460574..2461419 (-) 846 WP_171355465.1 TlyA family RNA methyltransferase -
  NSQ22_RS12500 (NSQ22_12500) dxs 2461425..2463317 (-) 1893 WP_011887782.1 1-deoxy-D-xylulose-5-phosphate synthase -
  NSQ22_RS12505 (NSQ22_12505) - 2463582..2464475 (-) 894 WP_008879803.1 polyprenyl synthetase family protein -
  NSQ22_RS12510 (NSQ22_12510) - 2464479..2464709 (-) 231 WP_008879804.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 64011.34 Da        Isoelectric Point: 4.7872

>NTDB_id=965482 NSQ22_RS12485 WP_171355466.1 2458177..2459898(-) (recN) [Geobacillus sp. FSL K6-3411]
MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDDRHPCCQK
CAEVGIDVSEGMVVLRRDILANGKSVCRINGKLVTTAILREVGATLVDIHGQHEHQELMDPSRHLPLLDEFGGAEMAEAL
ARYRAVYEQHEALVKKLKKLSENEQQMAHRLDLLTFQLREIEQASLELGEDERLMEEKVRIVNFQKIYSAIQKSYEALSG
EGRGLDSIGEAMGHLDDVAPMDAALKEAYETVANSYYLLEEVMYKLRDQLEELEYDPARLDAIESRLAEIQQLKRKYGAT
IADILQYAEAIAEEIETIENRETHVHELERQLAAVTSDLLMEAENVTNVRRTYARELIERIHQELKDLYMEKTQFDIIFA
KREGPLDAPLVDGVPVKFHEDGIDVVEFYISTNVGEPLKPLAKVASGGELSRIMLALKTIFSKHQGVTSIIFDEVDTGVS
GRVAQAIAEKIYRIASGSQVLCISHLPQVAAMADTHLFIAKETDGTRTKTVVKKLDEEEKVKEIGRMISGVEMTELTKQH
AKELLELAAKMKQ

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=965482 NSQ22_RS12485 WP_171355466.1 2458177..2459898(-) (recN) [Geobacillus sp. FSL K6-3411]
ATGCTCGCCGAGCTGTCGATTAAAAATTTCGCGATCATTGAATCGCTATCTTTGTCCTTTGACAAAGGACTGACAGTGTT
AACCGGCGAAACAGGGGCTGGTAAATCGATCATCATTGATGCGATTCATCTATTGATCGGCGGGCGCGGTTCCGCCGAAT
TTGTCCGTTTCGGCGCGGAAAAGGCAGAAATCGAAGGGCTGTTTTTGCTTGATGATGACCGCCACCCATGTTGCCAAAAG
TGCGCTGAGGTCGGCATCGATGTGAGCGAAGGAATGGTCGTTTTGCGCCGCGACATTTTGGCTAACGGCAAAAGCGTCTG
CCGCATTAACGGCAAGCTGGTGACGACCGCCATATTGCGGGAAGTTGGAGCGACGCTTGTCGATATTCACGGTCAGCATG
AGCATCAAGAGCTGATGGATCCGTCGCGTCATTTACCGCTTCTTGATGAATTCGGCGGTGCGGAGATGGCGGAGGCGCTC
GCACGCTACCGCGCTGTCTATGAACAGCATGAAGCGTTGGTGAAAAAATTAAAAAAACTGAGTGAAAATGAACAGCAAAT
GGCGCATCGGCTTGATTTATTGACATTTCAGCTGCGCGAAATCGAACAGGCCTCACTCGAGCTCGGAGAAGACGAACGGC
TGATGGAAGAAAAAGTGCGCATTGTCAACTTTCAAAAGATATACAGTGCCATCCAAAAAAGCTATGAAGCGCTCTCCGGT
GAAGGACGCGGCCTTGATTCGATCGGGGAAGCGATGGGCCACCTCGATGATGTCGCCCCGATGGATGCTGCGCTGAAGGA
GGCGTACGAAACAGTTGCCAACAGCTACTACTTGCTTGAAGAAGTGATGTACAAGCTGCGCGACCAGCTCGAGGAGCTTG
AGTATGACCCGGCGCGGCTTGACGCCATCGAAAGCCGCCTCGCTGAAATCCAACAGTTAAAACGAAAATACGGCGCAACG
ATCGCTGATATTTTGCAATATGCTGAGGCGATTGCTGAGGAAATCGAGACGATTGAAAACCGTGAGACGCATGTGCATGA
ACTTGAGCGGCAGCTTGCAGCAGTGACAAGCGATTTGCTGATGGAGGCGGAAAACGTGACCAACGTTCGCCGCACTTACG
CCCGGGAGCTGATTGAACGCATTCACCAAGAGTTAAAAGATTTGTACATGGAGAAGACGCAGTTTGACATCATCTTTGCG
AAACGTGAAGGACCACTCGATGCTCCATTGGTTGATGGCGTGCCGGTTAAGTTTCACGAAGATGGCATCGACGTCGTTGA
GTTTTACATTTCGACGAACGTCGGCGAGCCGTTGAAACCGCTCGCTAAAGTTGCTTCGGGCGGTGAATTGTCACGGATTA
TGTTAGCGTTGAAAACGATTTTTTCCAAACATCAAGGGGTGACGTCGATTATTTTCGACGAGGTGGATACAGGCGTCAGC
GGTCGTGTCGCCCAAGCGATCGCCGAAAAAATTTACCGCATTGCCAGCGGTTCACAAGTGCTTTGCATTTCTCACCTGCC
GCAAGTGGCTGCCATGGCGGACACGCATTTATTCATCGCCAAAGAAACGGACGGAACGCGGACGAAAACAGTGGTGAAAA
AGTTGGATGAGGAGGAGAAGGTGAAAGAAATCGGGCGAATGATTTCCGGCGTCGAAATGACGGAGTTGACAAAACAGCAT
GCCAAAGAACTGTTAGAACTGGCGGCCAAAATGAAACAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

62.718

100

0.628

Multiple sequence alignment