Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NSQ22_RS04340 Genome accession   NZ_CP150187
Coordinates   859221..861044 (+) Length   607 a.a.
NCBI ID   WP_011886942.1    Uniprot ID   A4IL78
Organism   Geobacillus sp. FSL K6-3411     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 854221..866044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ22_RS04320 (NSQ22_04320) - 854585..855253 (-) 669 WP_081157052.1 TerC family protein -
  NSQ22_RS04325 (NSQ22_04325) mecA 855469..856149 (+) 681 WP_008878968.1 adaptor protein MecA -
  NSQ22_RS04330 (NSQ22_04330) cls 856246..857754 (+) 1509 WP_008878967.1 cardiolipin synthase -
  NSQ22_RS04335 (NSQ22_04335) - 857839..859188 (+) 1350 WP_339264221.1 competence protein CoiA family protein -
  NSQ22_RS04340 (NSQ22_04340) pepF 859221..861044 (+) 1824 WP_011886942.1 oligoendopeptidase F Regulator
  NSQ22_RS04345 (NSQ22_04345) - 861058..861255 (-) 198 WP_011886943.1 hypothetical protein -
  NSQ22_RS04350 (NSQ22_04350) spxH 861527..862420 (-) 894 WP_081157054.1 ClpXP adapter protein SpxH -
  NSQ22_RS04355 (NSQ22_04355) - 862413..862826 (-) 414 WP_008878963.1 globin -
  NSQ22_RS04360 (NSQ22_04360) - 862928..863536 (-) 609 WP_029761533.1 lytic transglycosylase domain-containing protein -
  NSQ22_RS04365 (NSQ22_04365) - 863536..864123 (-) 588 WP_008878961.1 CYTH domain-containing protein -
  NSQ22_RS04370 (NSQ22_04370) - 864258..864635 (+) 378 WP_029761534.1 hypothetical protein -
  NSQ22_RS04375 (NSQ22_04375) - 864762..865400 (+) 639 WP_029761535.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 70281.13 Da        Isoelectric Point: 4.9488

>NTDB_id=965472 NSQ22_RS04340 WP_011886942.1 859221..861044(+) (pepF) [Geobacillus sp. FSL K6-3411]
MTVEENKAKKSLPSRSEIPVEETWRLEDIFPTDDAWEQEFQQVKAMIPKISEYKGRLGESPEVMYEALQYQDEVSMRLGK
LYTYAHMRYDQDTTNSFYQGLDDRAKGLYSEASSAMAFIVPEILAIDEAVLRSFLEQYEPLRLYEHALDEITRQRPHVLS
AEEEALLAQAAEVMQATSSTFSALNNADLTFPTIRDENGDEVEVTHGRFIRFLESTDRRVRRDAFHAVYHTYEKFQNTFA
NTLAGTVKKDNFFARVRRYKSAREAALDANNIPESVYDNLIATIHEHLPLLHRYVRLRKSVLGLDELHMYDLYTPLVQDV
KMEVTYDEAKQYMLDGLAPLGEEYVSIVKEGLENRWVDVRENKGKRSGAYSSGAYGTHPYILLNWQDNVNNLFTLVHEFG
HSVHSYYTRKTQPYPYAHYSIFVAEVASTCNEALLNDYLLKTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHLK
AQEGEALTAQTLTSLYYDLNKKYFGDDMVVDEEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVKRYIE
FLKAGSSDYPIEVLKKAGVDMTSAEPIRQACQVFAEKLEEMERLLGK

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=965472 NSQ22_RS04340 WP_011886942.1 859221..861044(+) (pepF) [Geobacillus sp. FSL K6-3411]
ATGACGGTGGAAGAGAATAAGGCAAAGAAATCGCTCCCGTCCCGGAGCGAAATCCCTGTCGAGGAAACGTGGCGGCTCGA
GGACATTTTCCCAACCGATGATGCGTGGGAACAGGAGTTTCAGCAAGTAAAGGCGATGATTCCAAAAATCAGCGAATACA
AAGGGCGGCTTGGCGAATCGCCGGAAGTGATGTATGAAGCGCTGCAATACCAAGATGAAGTATCGATGCGTCTCGGCAAG
CTGTATACATACGCCCATATGCGCTATGACCAAGACACGACGAACTCGTTTTACCAAGGGCTCGACGACAGGGCGAAAGG
GTTGTACAGCGAAGCATCGAGCGCGATGGCGTTTATCGTGCCGGAAATTTTAGCCATCGATGAAGCGGTGCTGCGTTCGT
TTTTAGAGCAATACGAACCGCTTCGGCTGTATGAGCACGCGTTAGACGAAATCACGCGCCAGCGCCCGCACGTCTTGTCC
GCTGAAGAAGAAGCGCTGTTGGCACAGGCTGCTGAGGTGATGCAGGCGACATCGTCGACGTTCAGTGCGTTAAACAACGC
TGACTTAACGTTCCCGACGATTCGCGACGAAAATGGGGATGAAGTGGAAGTGACGCACGGCCGGTTTATCCGATTTTTAG
AAAGTACCGACCGCCGCGTTCGTCGCGATGCGTTTCATGCAGTATACCATACGTACGAGAAGTTCCAGAACACGTTTGCC
AACACACTTGCGGGCACGGTGAAAAAAGACAACTTTTTCGCTCGCGTCCGCCGCTACAAATCAGCACGAGAAGCGGCGTT
AGATGCGAACAATATACCGGAAAGCGTCTATGATAATTTAATTGCCACAATTCATGAGCATTTACCGCTTTTGCACCGGT
ATGTGCGGCTGCGCAAAAGCGTACTAGGGCTTGACGAGCTGCATATGTATGACTTATATACTCCGCTCGTGCAAGATGTG
AAAATGGAAGTGACATACGACGAAGCGAAGCAATATATGCTTGACGGGTTGGCGCCGCTTGGCGAGGAATATGTGTCGAT
CGTCAAAGAAGGGCTTGAGAATCGATGGGTCGATGTGCGCGAAAATAAAGGAAAGCGAAGTGGAGCCTATTCGTCAGGAG
CGTATGGCACCCACCCGTATATTTTGCTGAACTGGCAAGATAATGTGAACAACTTGTTTACGCTCGTACATGAGTTCGGC
CACTCAGTCCATAGTTACTATACGCGCAAAACGCAGCCGTATCCGTATGCTCATTATTCGATTTTTGTCGCTGAAGTGGC
GTCGACATGCAATGAGGCATTGCTGAACGATTATTTGTTGAAAACGATCGATGATGAGAAAAAACGGCTATACTTGCTGA
ACCATTATCTTGAAGGATTCCGCGGTACCGTCTTTCGACAAACGATGTTTGCCGAATTCGAGCATTTGATCCATCTGAAG
GCGCAGGAGGGAGAGGCGCTGACAGCACAGACGCTCACATCGCTCTATTATGACCTGAACAAAAAATATTTCGGCGATGA
TATGGTGGTTGATGAGGAAATTGGTCTTGAATGGGCGCGCATCCCGCATTTTTATTACAACTATTACGTATATCAATACG
CGACCGGCTTCAGCGCGGCAACGGCGCTTAGCAAGCAGATTTTAGAGGAAGGCGAGCCGGCGGTGAAACGGTACATCGAG
TTTTTAAAAGCCGGAAGCTCTGATTATCCGATTGAGGTGCTGAAAAAAGCTGGCGTCGATATGACGAGCGCTGAACCGAT
TCGTCAAGCGTGTCAAGTGTTTGCAGAGAAGTTGGAAGAAATGGAGCGCTTGCTTGGAAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(213-592)

Oligopeptidase F (Peptidase_M3_N)

(122-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A4IL78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.01

97.858

0.499

Multiple sequence alignment