Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NYE72_RS27865 Genome accession   NZ_CP150186
Coordinates   6221153..6222520 (-) Length   455 a.a.
NCBI ID   WP_036680472.1    Uniprot ID   A0A1R0YRV5
Organism   Paenibacillus sp. FSL L8-0333     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6216153..6227520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE72_RS27840 (NYE72_27840) ispF 6216716..6217204 (-) 489 WP_036680486.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  NYE72_RS27845 (NYE72_27845) ispD 6217201..6217899 (-) 699 WP_076215384.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  NYE72_RS27850 (NYE72_27850) - 6217995..6219083 (-) 1089 WP_036680481.1 PIN/TRAM domain-containing protein -
  NYE72_RS27855 (NYE72_27855) pssA 6219261..6219998 (-) 738 WP_036680477.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  NYE72_RS27860 (NYE72_27860) disA 6220063..6221139 (-) 1077 WP_036680475.1 DNA integrity scanning diadenylate cyclase DisA -
  NYE72_RS27865 (NYE72_27865) radA 6221153..6222520 (-) 1368 WP_036680472.1 DNA repair protein RadA Machinery gene
  NYE72_RS27870 (NYE72_27870) clpC 6222707..6225175 (-) 2469 WP_036680471.1 ATP-dependent protease ATP-binding subunit ClpC -
  NYE72_RS27875 (NYE72_27875) - 6225211..6226275 (-) 1065 WP_036680469.1 protein arginine kinase -
  NYE72_RS27880 (NYE72_27880) - 6226304..6226828 (-) 525 WP_036680467.1 UvrB/UvrC motif-containing protein -
  NYE72_RS27885 (NYE72_27885) - 6226859..6227320 (-) 462 WP_036680465.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49750.55 Da        Isoelectric Point: 6.4197

>NTDB_id=965452 NYE72_RS27865 WP_036680472.1 6221153..6222520(-) (radA) [Paenibacillus sp. FSL L8-0333]
MAKAKTKFFCTDCGYESPKWFGKCPGCQAWNSMVEETESVVKTQGMNAPIFHSKEKAQSIISIESDKEPRILTGIGELNR
VLGGGIVPGSLVLVGGDPGIGKSTLLLQTSHALTTQGLRVLYISGEESVRQTKLRADRLDALSTELYVLCETNMESIEEA
IEQIQPQFLVIDSIQTVFMPEVTSAPGSVTQVRECTTRFMRIAKIRGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEIGIFEMGEAGLTEVENPSELFLSERPLGVAGSTVVASMEGTRPVLVELQALVAATHFPS
PRRMCTGMDHQRMALIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAIDLAVAISIASSFRDISTKPYDVFFGEVGLTGE
VRGVSRAEMRVKEAAKLGFRRVIMPEKSMKGWKHPQDIQIIGVSTVADALSVALD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=965452 NYE72_RS27865 WP_036680472.1 6221153..6222520(-) (radA) [Paenibacillus sp. FSL L8-0333]
ATGGCTAAAGCAAAAACAAAATTTTTTTGCACCGACTGTGGATACGAATCGCCAAAATGGTTCGGGAAATGCCCAGGGTG
CCAGGCTTGGAACTCCATGGTGGAGGAAACGGAAAGCGTAGTCAAAACACAGGGAATGAATGCCCCTATTTTTCATAGTA
AAGAAAAGGCACAGTCGATCATAAGTATAGAAAGTGACAAGGAACCGCGCATACTGACAGGTATAGGTGAGCTTAACCGT
GTTCTCGGTGGGGGGATCGTACCAGGATCGCTGGTACTAGTAGGGGGAGACCCAGGAATCGGTAAATCTACGCTCTTATT
ACAGACCTCGCACGCCCTTACAACACAGGGATTGCGAGTATTGTATATCTCGGGCGAAGAATCGGTAAGGCAAACTAAGC
TGCGCGCGGATCGCCTCGATGCGTTGTCAACGGAGCTTTATGTACTATGTGAGACAAATATGGAAAGCATAGAAGAAGCG
ATCGAACAAATCCAGCCACAATTTCTTGTCATCGATTCTATTCAGACCGTATTTATGCCAGAAGTAACGAGTGCGCCAGG
CAGCGTGACCCAGGTTCGGGAGTGTACGACAAGATTTATGCGTATCGCTAAGATTCGTGGAATTGCAACAGTTCTCGTTG
GTCATGTTACCAAGGAAGGGGCTATTGCTGGACCACGGATGCTTGAACATATGGTGGACTGCGTGCTGTATTTTGAGGGT
GAGCGGCATCATACGTATAGACTTTTGCGGGCTGTAAAGAACCGCTTTGGCTCTACGAATGAAATCGGCATTTTCGAAAT
GGGTGAAGCGGGGCTTACCGAAGTAGAGAATCCATCGGAGCTCTTTTTATCGGAACGTCCGCTTGGCGTGGCTGGTTCTA
CTGTGGTGGCTAGTATGGAGGGAACTAGACCTGTGCTTGTAGAACTTCAGGCACTTGTTGCTGCCACCCACTTCCCTTCC
CCACGGCGAATGTGCACAGGCATGGATCACCAGCGGATGGCACTTATTATCGCTGTACTCGAGAAACGGATGGGCATGTT
CCTGCAGAATCAGGATGCATACCTTAATGTTGCCGGGGGAGTAAAGCTGGATGAACCGGCGATTGATCTAGCTGTAGCAA
TTAGTATCGCCTCCAGTTTTCGTGATATTTCAACAAAACCTTACGACGTTTTCTTCGGAGAAGTAGGACTTACCGGTGAG
GTAAGAGGCGTTTCGCGCGCGGAAATGCGCGTTAAGGAGGCCGCAAAGCTTGGCTTCCGGCGGGTGATTATGCCTGAAAA
GAGCATGAAGGGATGGAAGCACCCGCAAGATATCCAGATTATTGGCGTCAGTACCGTAGCAGATGCACTATCGGTCGCGT
TAGATTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-220)

Subunit ChlI of Mg-chelatase (ChlI)

(345-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R0YRV5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.231

100

0.668
  radA Streptococcus mitis NCTC 12261

58.444

98.901

0.578
  radA Streptococcus pneumoniae Rx1

58.444

98.901

0.578
  radA Streptococcus pneumoniae D39

58.444

98.901

0.578
  radA Streptococcus pneumoniae R6

58.444

98.901

0.578
  radA Streptococcus pneumoniae TIGR4

58.444

98.901

0.578
  radA Streptococcus mitis SK321

58.444

98.901

0.578

Multiple sequence alignment