Detailed information
Bioinformatically predicted
Overview
| Name | nucA/comI | Type | Machinery gene |
| Locus tag | NYE72_RS23015 | Genome accession | NZ_CP150186 |
| Coordinates | 5144647..5145078 (+) | Length | 143 a.a. |
| NCBI ID | WP_036683407.1 | Uniprot ID | A0A1R0X267 |
| Organism | Paenibacillus sp. FSL L8-0333 | ||
| Function | cleavage of dsDNA into ssDNA (predicted from homology) DNA processing |
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Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 5130738..5152481 | 5144647..5145078 | within | 0 |
Gene organization within MGE regions
Location: 5130738..5152481
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NYE72_RS22930 (NYE72_22930) | - | 5130738..5131571 (-) | 834 | WP_339210511.1 | carbohydrate ABC transporter permease | - |
| NYE72_RS22935 (NYE72_22935) | - | 5131568..5132476 (-) | 909 | WP_339210513.1 | sugar ABC transporter permease | - |
| NYE72_RS22940 (NYE72_22940) | - | 5133255..5134310 (-) | 1056 | WP_339210515.1 | LacI family DNA-binding transcriptional regulator | - |
| NYE72_RS22945 (NYE72_22945) | - | 5134435..5135679 (-) | 1245 | WP_076315991.1 | hypothetical protein | - |
| NYE72_RS22950 (NYE72_22950) | - | 5136064..5136444 (+) | 381 | WP_339210517.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| NYE72_RS22955 (NYE72_22955) | - | 5136514..5136723 (+) | 210 | WP_339210520.1 | helix-turn-helix domain-containing protein | - |
| NYE72_RS22960 (NYE72_22960) | - | 5137206..5137478 (+) | 273 | WP_339210523.1 | helix-turn-helix domain-containing protein | - |
| NYE72_RS22965 (NYE72_22965) | - | 5137556..5138761 (+) | 1206 | WP_339210525.1 | site-specific integrase | - |
| NYE72_RS22975 (NYE72_22975) | - | 5139174..5139650 (-) | 477 | WP_052097266.1 | WGxxGxxG-CTERM domain-containing protein | - |
| NYE72_RS22980 (NYE72_22980) | - | 5139726..5140412 (-) | 687 | WP_036683338.1 | M15 family metallopeptidase | - |
| NYE72_RS22985 (NYE72_22985) | - | 5140530..5140694 (+) | 165 | WP_169744799.1 | hypothetical protein | - |
| NYE72_RS22990 (NYE72_22990) | - | 5140691..5141026 (-) | 336 | WP_036683341.1 | YolD-like family protein | - |
| NYE72_RS22995 (NYE72_22995) | - | 5141234..5141794 (-) | 561 | WP_036683343.1 | hypothetical protein | - |
| NYE72_RS23000 (NYE72_23000) | - | 5141912..5142400 (+) | 489 | WP_036683346.1 | PH domain-containing protein | - |
| NYE72_RS23005 (NYE72_23005) | - | 5142474..5143949 (-) | 1476 | WP_036683349.1 | glycosyl hydrolase | - |
| NYE72_RS23010 (NYE72_23010) | - | 5144124..5144540 (-) | 417 | WP_036683351.1 | cytidine deaminase | - |
| NYE72_RS23015 (NYE72_23015) | nucA/comI | 5144647..5145078 (+) | 432 | WP_036683407.1 | NucA/NucB deoxyribonuclease domain-containing protein | Machinery gene |
| NYE72_RS23020 (NYE72_23020) | - | 5145160..5145309 (-) | 150 | WP_155288175.1 | hypothetical protein | - |
| NYE72_RS23025 (NYE72_23025) | - | 5145459..5145635 (+) | 177 | WP_076098563.1 | YjfB family protein | - |
| NYE72_RS23030 (NYE72_23030) | - | 5145799..5146350 (+) | 552 | WP_036683410.1 | ImmA/IrrE family metallo-endopeptidase | - |
| NYE72_RS23035 (NYE72_23035) | - | 5146417..5146578 (+) | 162 | WP_155288176.1 | hypothetical protein | - |
| NYE72_RS23040 (NYE72_23040) | - | 5146662..5146808 (-) | 147 | WP_155288177.1 | hypothetical protein | - |
| NYE72_RS23045 (NYE72_23045) | - | 5146918..5147253 (+) | 336 | WP_036683354.1 | hypothetical protein | - |
| NYE72_RS23050 (NYE72_23050) | - | 5147699..5148193 (+) | 495 | WP_036683356.1 | sigma-70 family RNA polymerase sigma factor | - |
| NYE72_RS23055 (NYE72_23055) | - | 5148190..5149179 (+) | 990 | WP_036683358.1 | hypothetical protein | - |
| NYE72_RS23060 (NYE72_23060) | - | 5149266..5149469 (+) | 204 | WP_339210529.1 | hypothetical protein | - |
| NYE72_RS23065 (NYE72_23065) | - | 5150025..5151583 (+) | 1559 | WP_094903917.1 | IS3 family transposase | - |
| NYE72_RS23070 (NYE72_23070) | - | 5151807..5152481 (+) | 675 | WP_076317116.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 143 a.a. Molecular weight: 15898.68 Da Isoelectric Point: 4.3968
>NTDB_id=965445 NYE72_RS23015 WP_036683407.1 5144647..5145078(+) (nucA/comI) [Paenibacillus sp. FSL L8-0333]
MKKWISSLIIVALLALASYWFEQNGEPTDPSSPSNSSVVQLTFPSDRYPETAKHIQDAIAKGESATCTINREQAEENRKE
SLKGIPTKKGYDRDEWPMAMCEEGGVGADIEYITPSDNRGAGSWVGNQLEDYADGTRVEFMFK
MKKWISSLIIVALLALASYWFEQNGEPTDPSSPSNSSVVQLTFPSDRYPETAKHIQDAIAKGESATCTINREQAEENRKE
SLKGIPTKKGYDRDEWPMAMCEEGGVGADIEYITPSDNRGAGSWVGNQLEDYADGTRVEFMFK
Nucleotide
Download Length: 432 bp
>NTDB_id=965445 NYE72_RS23015 WP_036683407.1 5144647..5145078(+) (nucA/comI) [Paenibacillus sp. FSL L8-0333]
GTGAAAAAATGGATCTCCAGTCTCATCATTGTTGCATTACTTGCTTTGGCTAGTTACTGGTTTGAACAAAACGGAGAGCC
TACAGACCCCTCGTCTCCATCCAATTCGAGTGTTGTTCAGCTAACCTTCCCATCAGACCGCTATCCTGAGACCGCCAAGC
ATATTCAGGATGCCATTGCGAAAGGTGAATCCGCCACATGTACGATTAACCGAGAGCAGGCTGAAGAGAACCGCAAAGAG
TCCTTAAAAGGGATCCCTACTAAAAAGGGATATGACCGGGATGAATGGCCAATGGCTATGTGTGAGGAAGGCGGCGTTGG
TGCCGACATTGAATACATAACGCCAAGCGATAACCGCGGGGCAGGAAGCTGGGTTGGCAATCAGCTGGAGGATTATGCAG
ACGGAACCCGGGTGGAATTTATGTTTAAATAA
GTGAAAAAATGGATCTCCAGTCTCATCATTGTTGCATTACTTGCTTTGGCTAGTTACTGGTTTGAACAAAACGGAGAGCC
TACAGACCCCTCGTCTCCATCCAATTCGAGTGTTGTTCAGCTAACCTTCCCATCAGACCGCTATCCTGAGACCGCCAAGC
ATATTCAGGATGCCATTGCGAAAGGTGAATCCGCCACATGTACGATTAACCGAGAGCAGGCTGAAGAGAACCGCAAAGAG
TCCTTAAAAGGGATCCCTACTAAAAAGGGATATGACCGGGATGAATGGCCAATGGCTATGTGTGAGGAAGGCGGCGTTGG
TGCCGACATTGAATACATAACGCCAAGCGATAACCGCGGGGCAGGAAGCTGGGTTGGCAATCAGCTGGAGGATTATGCAG
ACGGAACCCGGGTGGAATTTATGTTTAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| nucA/comI | Bacillus subtilis subsp. subtilis str. 168 |
68.932 |
72.028 |
0.497 |