Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   NYE72_RS15550 Genome accession   NZ_CP150186
Coordinates   3482274..3484028 (-) Length   584 a.a.
NCBI ID   WP_339209949.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL L8-0333     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3477274..3489028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE72_RS15535 (NYE72_15535) - 3477834..3478769 (+) 936 WP_038571187.1 carbohydrate ABC transporter permease -
  NYE72_RS15540 (NYE72_15540) - 3478860..3480422 (+) 1563 WP_339209946.1 ABC transporter substrate-binding protein -
  NYE72_RS15545 (NYE72_15545) rcrQ 3480517..3482277 (-) 1761 WP_076316420.1 ABC transporter ATP-binding protein Regulator
  NYE72_RS15550 (NYE72_15550) rcrP 3482274..3484028 (-) 1755 WP_339209949.1 ABC transporter ATP-binding protein Regulator
  NYE72_RS15555 (NYE72_15555) - 3484148..3485203 (-) 1056 WP_081382441.1 HAMP domain-containing sensor histidine kinase -
  NYE72_RS15560 (NYE72_15560) - 3485200..3485874 (-) 675 WP_036677195.1 response regulator transcription factor -
  NYE72_RS15565 (NYE72_15565) - 3486199..3487164 (+) 966 WP_339209952.1 aldo/keto reductase -
  NYE72_RS15570 (NYE72_15570) - 3487201..3488052 (+) 852 WP_036677189.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 584 a.a.        Molecular weight: 64160.71 Da        Isoelectric Point: 7.7377

>NTDB_id=965441 NYE72_RS15550 WP_339209949.1 3482274..3484028(-) (rcrP) [Paenibacillus sp. FSL L8-0333]
MVTILKYLKPKEWTLIGISILFIVTQVWLDLELPGYMSEITRLVQIPGSEMSEIITAGGWMLLCALGSLATSIIVAGIAA
KIAANFSSRLRSKLFDKVQSFSMEEINNFSTASLITRSTNDITQVQMLIVIGLQLLVKAPILAVWAMLKITGKSWQWSLA
TGVAIGVLILIVGIVIVLVLPKFQKLQQLTDNLNRVARENLTGLRVIRAYNAESYQEDKFSVANSELTRTNLFANNVLSM
MMPSISLIMSGLSLAIYWIGAILIQNANGTAKMGLFSDMIVFSSYAMQVVMAFMMLIMIFILMPRAHVSAKRINEVLDTK
PSLENGSLTTSKTNRLGEVEFKKVSFKYPDAEEYVIEDISFTVKKGETVAFIGSTGCGKSTVVNLIPRFYDATAGEVLVD
GINVNQYEQTALRNKMGYVSQKAILFGGTVSSNVAFGDNGSDLSSDVVDAIYTSQASDFVEKMEGSYEAHVSQGGTNLSG
GQKQRLSIARAIARRPEILIFDDSFSALDYKTDRKLRSELKKKSSGTTILIVAQRIGTIKDADKIIVLEAGRMAGMGTHD
ELMQTCDVYQEIAYSQLSKEELAQ

Nucleotide


Download         Length: 1755 bp        

>NTDB_id=965441 NYE72_RS15550 WP_339209949.1 3482274..3484028(-) (rcrP) [Paenibacillus sp. FSL L8-0333]
ATGGTAACTATACTTAAGTACTTAAAACCGAAGGAATGGACCCTAATCGGTATCAGCATCCTGTTCATTGTCACACAGGT
ATGGCTGGATCTGGAATTGCCCGGTTATATGAGCGAGATTACTCGTCTTGTACAGATACCAGGAAGTGAAATGAGCGAAA
TCATTACAGCCGGAGGCTGGATGTTGCTCTGTGCCCTCGGCAGCTTAGCTACATCAATCATAGTGGCAGGGATCGCCGCT
AAAATTGCCGCTAACTTCTCTTCAAGATTACGCTCCAAATTGTTTGATAAGGTACAGTCTTTTTCTATGGAAGAAATCAA
CAACTTCTCTACAGCTAGTTTAATTACCCGTTCAACGAATGACATTACACAAGTGCAAATGCTAATTGTCATTGGTCTGC
AACTGCTGGTGAAGGCTCCCATCCTTGCCGTTTGGGCAATGCTCAAAATTACAGGCAAGAGTTGGCAGTGGTCGCTTGCT
ACCGGTGTCGCAATTGGGGTATTGATTCTTATTGTCGGCATAGTGATCGTGCTTGTGCTTCCGAAATTCCAAAAATTGCA
GCAACTGACTGATAATCTTAATCGTGTTGCAAGAGAGAATCTTACAGGCCTTCGTGTCATTCGTGCTTATAATGCGGAAA
GTTACCAGGAAGATAAATTTAGCGTAGCCAACAGCGAGCTTACCCGAACGAATTTATTTGCCAACAATGTACTGTCCATG
ATGATGCCAAGTATTTCTCTCATTATGAGCGGTTTAAGTCTCGCAATATATTGGATTGGTGCTATTTTGATTCAAAATGC
CAATGGTACGGCGAAGATGGGCTTATTTTCAGATATGATTGTCTTCTCATCCTATGCGATGCAGGTGGTTATGGCATTCA
TGATGCTGATCATGATTTTTATCCTGATGCCTCGTGCCCATGTATCCGCTAAAAGAATCAATGAAGTGTTGGATACTAAG
CCAAGCTTAGAGAACGGATCACTTACTACCTCCAAGACAAATCGGTTGGGTGAAGTCGAATTCAAAAAAGTCAGCTTTAA
ATATCCGGATGCAGAAGAATACGTTATTGAGGATATCAGCTTTACGGTGAAAAAAGGAGAAACTGTGGCCTTCATCGGTT
CAACCGGATGCGGAAAAAGCACTGTAGTGAACCTGATCCCTCGCTTTTATGATGCTACAGCAGGTGAAGTGTTGGTGGAC
GGTATTAATGTTAACCAATATGAGCAAACTGCACTGCGCAATAAAATGGGATATGTATCTCAGAAAGCGATTTTGTTTGG
CGGCACGGTGAGCTCTAATGTTGCTTTTGGCGACAATGGCAGTGATCTGTCCTCTGATGTTGTAGATGCCATTTACACCT
CTCAAGCTTCAGATTTTGTTGAAAAGATGGAAGGAAGCTACGAGGCTCATGTCTCTCAAGGCGGTACGAACTTGTCTGGC
GGTCAAAAGCAACGTCTTTCCATTGCCCGAGCCATTGCCCGTCGTCCTGAAATATTGATCTTCGACGATTCCTTCTCAGC
ACTTGATTATAAGACGGATCGCAAATTGCGTAGTGAATTGAAGAAGAAATCTAGCGGTACGACGATACTAATCGTTGCGC
AGCGGATCGGTACAATCAAAGACGCAGATAAAATCATTGTACTGGAAGCCGGACGAATGGCAGGCATGGGAACACATGAT
GAATTGATGCAGACCTGTGATGTCTACCAAGAGATTGCTTACTCACAACTTTCAAAGGAGGAGCTAGCTCAATGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-293)

ABC transporter (ABC_tran)

(357-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.013

100

0.531

Multiple sequence alignment