Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NYE72_RS15545 Genome accession   NZ_CP150186
Coordinates   3480517..3482277 (-) Length   586 a.a.
NCBI ID   WP_076316420.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL L8-0333     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3475517..3487277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE72_RS15530 (NYE72_15530) - 3476861..3477820 (+) 960 WP_038574490.1 ABC transporter permease subunit -
  NYE72_RS15535 (NYE72_15535) - 3477834..3478769 (+) 936 WP_038571187.1 carbohydrate ABC transporter permease -
  NYE72_RS15540 (NYE72_15540) - 3478860..3480422 (+) 1563 WP_339209946.1 ABC transporter substrate-binding protein -
  NYE72_RS15545 (NYE72_15545) rcrQ 3480517..3482277 (-) 1761 WP_076316420.1 ABC transporter ATP-binding protein Regulator
  NYE72_RS15550 (NYE72_15550) rcrP 3482274..3484028 (-) 1755 WP_339209949.1 ABC transporter ATP-binding protein Regulator
  NYE72_RS15555 (NYE72_15555) - 3484148..3485203 (-) 1056 WP_081382441.1 HAMP domain-containing sensor histidine kinase -
  NYE72_RS15560 (NYE72_15560) - 3485200..3485874 (-) 675 WP_036677195.1 response regulator transcription factor -
  NYE72_RS15565 (NYE72_15565) - 3486199..3487164 (+) 966 WP_339209952.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64513.76 Da        Isoelectric Point: 6.5784

>NTDB_id=965440 NYE72_RS15545 WP_076316420.1 3480517..3482277(-) (rcrQ) [Paenibacillus sp. FSL L8-0333]
MNKSKEQLNTWSKLLHYCRKYIPVVLIAIISAAIGTVLTLLGPDKLSEMTDLITAGLVTGIDMEAVTSIGLFLVFIYILS
AVLSLVQGLIMSAVTQKVSKNLRADLSRKMNKLPISYYNNSTTGDILSRVTNDVDTIGQALNQSVGTLVTALALFTGSII
MMFKTNVIMTITAVVATIIGFGLIAAIMKKSQKYFQSQQEYLGKINGHVEEVYTGHTVVKAYNGESQMRNTFESLNMNLK
DSAFKAQFLSGLMMPIMMFIGNLGFVAVCVVGAVLAMNGTISFGVIVAFILYVRYFTQPLSQIAQAAQSLQSASAASKRV
FEFLDADEMDNESHKERHLKTATGKVDFEHVQFAYENSDKLVIKDFSAEIKPGQKIAIVGPTGAGKTTLINLLIRFNELK
GGEIYIDDTPISSLTRENIHDLFCMVLQDTWLFEGTIRENLVYNKTGVTDKEVEDACKSVGLHHFIQTLSAGYNTILNDK
VNLSTGQKQQLTIARAMLKNAPMLILDEATSSVDTRTELLIQQAMDKLMEGRTSFVIAHRLSTIKNADVILVLKEGDILE
SGSHEELLAKNGFYAELYNSQFDQAS

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=965440 NYE72_RS15545 WP_076316420.1 3480517..3482277(-) (rcrQ) [Paenibacillus sp. FSL L8-0333]
ATGAACAAAAGCAAAGAGCAACTCAACACGTGGAGCAAACTTCTCCACTATTGCAGAAAATATATCCCTGTAGTCCTTAT
AGCTATTATTAGTGCAGCAATCGGTACGGTTCTGACTTTGCTTGGACCGGATAAGCTTTCGGAGATGACAGACTTGATCA
CGGCGGGCCTCGTCACCGGAATTGATATGGAAGCAGTAACTTCTATCGGCCTTTTCCTTGTATTTATCTATATCCTTAGC
GCTGTGTTATCTTTGGTACAAGGATTAATTATGTCCGCAGTTACGCAAAAGGTCTCCAAAAACTTAAGAGCCGATCTCTC
ACGCAAAATGAACAAACTTCCGATTTCTTATTATAATAATTCTACAACCGGTGACATTCTGTCCCGGGTTACCAACGATG
TGGATACGATCGGGCAAGCTTTAAACCAAAGCGTCGGTACACTGGTAACTGCCCTTGCCCTCTTTACGGGATCCATCATC
ATGATGTTCAAAACAAATGTGATCATGACTATTACGGCGGTTGTTGCAACTATCATTGGCTTTGGCCTCATAGCGGCAAT
TATGAAAAAATCCCAAAAGTATTTTCAAAGTCAGCAAGAATACTTAGGGAAAATCAATGGTCATGTGGAGGAAGTATATA
CAGGACATACTGTAGTGAAAGCTTACAATGGTGAATCACAAATGCGCAATACATTTGAATCCCTGAATATGAATCTTAAA
GATAGTGCATTTAAAGCGCAGTTCCTCTCCGGTCTTATGATGCCGATTATGATGTTTATAGGCAATCTAGGTTTTGTGGC
CGTTTGTGTCGTTGGTGCTGTACTTGCTATGAACGGAACGATATCCTTTGGGGTCATTGTAGCCTTTATACTGTATGTCC
GTTACTTTACACAACCGCTCTCTCAGATTGCTCAAGCCGCACAAAGTCTGCAATCGGCTTCTGCGGCAAGCAAACGTGTC
TTCGAGTTCCTCGATGCTGATGAAATGGACAATGAAAGTCATAAAGAAAGACATCTTAAAACTGCAACGGGCAAAGTGGA
TTTTGAACATGTGCAATTTGCTTATGAAAATTCAGATAAACTTGTGATTAAAGATTTTTCTGCAGAGATTAAGCCTGGGC
AAAAAATTGCTATAGTCGGCCCTACCGGCGCAGGTAAAACTACACTGATAAATCTTCTAATACGGTTTAATGAATTAAAG
GGCGGAGAGATTTATATTGATGATACCCCCATCAGCAGCTTAACAAGAGAAAACATCCATGATCTATTCTGTATGGTCTT
GCAGGACACCTGGCTTTTTGAGGGCACTATCAGGGAAAATCTGGTGTACAACAAAACAGGTGTAACCGATAAAGAAGTTG
AAGATGCTTGTAAGTCGGTAGGCTTGCATCATTTCATTCAGACCTTAAGTGCCGGTTACAATACCATACTAAATGACAAG
GTTAATTTATCCACCGGCCAAAAGCAACAGCTTACCATCGCCCGCGCGATGCTCAAGAATGCTCCAATGCTCATCCTCGA
TGAAGCTACAAGCTCAGTCGATACAAGAACAGAGCTCTTGATTCAGCAGGCAATGGATAAGCTTATGGAAGGAAGAACCT
CCTTTGTTATTGCGCATAGACTCTCAACCATTAAGAACGCCGATGTGATTCTGGTTCTGAAGGAAGGCGATATTCTGGAA
AGCGGCAGCCACGAAGAACTACTTGCCAAAAATGGTTTCTATGCGGAGCTTTATAATAGCCAATTTGATCAAGCCTCTTA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-300)

ABC transporter (ABC_tran)

(364-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.717

99.488

0.544

Multiple sequence alignment