Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   NYE72_RS06195 Genome accession   NZ_CP150186
Coordinates   1407514..1408461 (+) Length   315 a.a.
NCBI ID   WP_339211541.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL L8-0333     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1402514..1413461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE72_RS06165 (NYE72_06165) - 1402830..1403795 (+) 966 WP_038574185.1 nitronate monooxygenase family protein -
  NYE72_RS06170 (NYE72_06170) - 1403880..1404974 (-) 1095 WP_036681827.1 Xaa-Pro peptidase family protein -
  NYE72_RS06175 (NYE72_06175) - 1405200..1406042 (+) 843 WP_076104813.1 SDR family oxidoreductase -
  NYE72_RS06180 (NYE72_06180) - 1406068..1406571 (+) 504 WP_076104812.1 GNAT family N-acetyltransferase -
  NYE72_RS06185 (NYE72_06185) - 1406589..1406933 (-) 345 WP_076104811.1 helix-turn-helix domain-containing protein -
  NYE72_RS06190 (NYE72_06190) - 1407025..1407285 (+) 261 WP_076104810.1 YqkE family protein -
  NYE72_RS06195 (NYE72_06195) ceuB 1407514..1408461 (+) 948 WP_339211541.1 ABC transporter permease Machinery gene
  NYE72_RS06200 (NYE72_06200) - 1408464..1409408 (+) 945 WP_339211542.1 iron chelate uptake ABC transporter family permease subunit -
  NYE72_RS06205 (NYE72_06205) - 1409402..1410157 (+) 756 WP_339211544.1 ABC transporter ATP-binding protein -
  NYE72_RS06210 (NYE72_06210) - 1410280..1411284 (+) 1005 WP_339211546.1 siderophore ABC transporter substrate-binding protein -
  NYE72_RS06215 (NYE72_06215) - 1411451..1411954 (+) 504 WP_038569189.1 sigma-70 family RNA polymerase sigma factor -
  NYE72_RS06220 (NYE72_06220) - 1411947..1413140 (+) 1194 WP_038569190.1 anti-sigma factor -

Sequence


Protein


Download         Length: 315 a.a.        Molecular weight: 34521.67 Da        Isoelectric Point: 10.0525

>NTDB_id=965432 NYE72_RS06195 WP_339211541.1 1407514..1408461(+) (ceuB) [Paenibacillus sp. FSL L8-0333]
MKLKYLSLLLIVFSFISLFIGVKDISPLDLFHLTESQAQTLLVSRIPRLAALITAGVSMSIAGLIMQQLSRNKFVSPTTA
GTMDSAKFGILVSLMLFTGATPMQKLLVAFVFALLGTFIFMRILDRIKFKDSIFIPLVGLMFGNIVGSITTFFAYKNDLI
QNISSWMLGDFSTIIKGQYELIYISIPLVILAYLFANKFTVAGMGEDFSVNLGMNYKAVVNVGLVIVALISSVVILTVGT
IPFLGLVVPNIVTLYIGDNLKKNLAHTAILGAVFLLFCDILGRLIIYPYEISISLTVGVIGSGLFIYLLMRRKAN

Nucleotide


Download         Length: 948 bp        

>NTDB_id=965432 NYE72_RS06195 WP_339211541.1 1407514..1408461(+) (ceuB) [Paenibacillus sp. FSL L8-0333]
ATGAAACTAAAATATTTGTCCCTACTTCTAATAGTATTTTCATTTATTTCTTTGTTTATAGGCGTTAAAGATATATCCCC
ATTAGATCTCTTTCATCTTACGGAATCTCAAGCACAGACCTTGCTGGTAAGCCGGATTCCCCGGTTAGCCGCATTGATTA
CCGCTGGAGTCAGCATGAGTATTGCCGGATTAATTATGCAACAGCTGTCACGCAATAAATTCGTCTCACCGACTACGGCA
GGGACGATGGATTCCGCAAAATTTGGTATTCTCGTATCCCTCATGTTATTCACAGGCGCAACGCCAATGCAGAAATTGCT
TGTTGCTTTTGTTTTTGCGCTATTGGGCACCTTTATTTTTATGAGAATCCTGGATCGGATCAAGTTCAAGGATAGTATTT
TTATCCCGCTGGTCGGACTCATGTTCGGCAACATTGTAGGCTCGATTACAACATTTTTTGCGTATAAAAATGATTTGATT
CAGAATATCTCATCTTGGATGCTTGGGGATTTCTCGACGATTATCAAAGGCCAATACGAATTAATTTATATCAGCATTCC
ACTTGTCATTCTGGCGTACCTCTTCGCTAATAAATTTACGGTAGCCGGTATGGGCGAGGATTTCTCCGTTAATCTTGGCA
TGAACTACAAAGCGGTGGTCAACGTGGGATTGGTAATTGTAGCGTTAATCTCTTCTGTTGTCATTTTAACCGTAGGTACG
ATTCCATTTCTGGGTCTAGTAGTACCTAACATTGTAACGTTGTACATAGGGGATAACCTCAAAAAAAATCTGGCGCATAC
AGCCATTCTCGGAGCGGTGTTCCTCCTGTTCTGCGATATTCTGGGCAGGCTCATTATCTATCCATATGAAATATCAATCA
GTCTCACGGTAGGCGTCATCGGTAGTGGTCTGTTTATCTACTTGCTGATGAGAAGAAAGGCGAACTAG

Domains


Predicted by InterproScan.

(9-311)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

56.369

99.683

0.562


Multiple sequence alignment