Detailed information NTG0965419

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACJKII_RS06930
• Genome accession: NZ_CP174606
• Coordinates: 1479873..1480877 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain SKYC.SG.Lo
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1474873..1485877

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJKII_RS06900 (ACJKII_06900)	fghA	1474965..1475816 (+)	852	WP_004345459.1	S-formylglutathione hydrolase	-
ACJKII_RS06905 (ACJKII_06905)	ispF	1475887..1476360 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACJKII_RS06910 (ACJKII_06910)	truD	1476357..1477424 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
ACJKII_RS06915 (ACJKII_06915)	surE	1477412..1478161 (+)	750	WP_004345454.1	5'/3'-nucleotidase SurE	-
ACJKII_RS06920 (ACJKII_06920)	-	1478194..1478829 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACJKII_RS06925 (ACJKII_06925)	-	1478875..1479768 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACJKII_RS06930 (ACJKII_06930)	rpoS	1479873..1480877 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
ACJKII_RS06935 (ACJKII_06935)	fdxA	1481303..1481626 (-)	324	WP_003092272.1	ferredoxin FdxA	-
ACJKII_RS06940 (ACJKII_06940)	mutS	1481693..1484260 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
ACJKII_RS06945 (ACJKII_06945)	-	1484386..1485393 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=965419 ACJKII_RS06930 WP_003113871.1 1479873..1480877(+) (rpoS) [Pseudomonas aeruginosa strain SKYC.SG.Lo]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=965419 ACJKII_RS06930 WP_003113871.1 1479873..1480877(+) (rpoS) [Pseudomonas aeruginosa strain SKYC.SG.Lo]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653