Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   NSQ42_RS12255 Genome accession   NZ_CP150184
Coordinates   2381349..2382152 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-0812     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2376349..2387152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ42_RS12230 (NSQ42_12230) - 2377495..2378226 (-) 732 WP_015714234.1 glycerophosphodiester phosphodiesterase -
  NSQ42_RS12235 (NSQ42_12235) - 2378305..2378925 (-) 621 WP_072692696.1 N-acetylmuramoyl-L-alanine amidase -
  NSQ42_RS12240 (NSQ42_12240) - 2378940..2379233 (-) 294 WP_003230284.1 lipoprotein -
  NSQ42_RS12245 (NSQ42_12245) - 2379541..2379693 (+) 153 WP_014480226.1 hypothetical protein -
  NSQ42_RS12250 (NSQ42_12250) - 2379766..2380884 (+) 1119 WP_015714237.1 NADH-dependent flavin oxidoreductase -
  NSQ42_RS12255 (NSQ42_12255) spo0A 2381349..2382152 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  NSQ42_RS12260 (NSQ42_12260) spoIVB 2382428..2383708 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  NSQ42_RS12265 (NSQ42_12265) recN 2383882..2385612 (-) 1731 WP_015714238.1 DNA repair protein RecN Machinery gene
  NSQ42_RS12270 (NSQ42_12270) argR 2385649..2386098 (-) 450 WP_003230265.1 arginine repressor ArgR -
  NSQ42_RS12275 (NSQ42_12275) - 2386196..2387041 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=965360 NSQ42_RS12255 WP_003226427.1 2381349..2382152(-) (spo0A) [Bacillus sp. FSL W8-0812]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=965360 NSQ42_RS12255 WP_003226427.1 2381349..2382152(-) (spo0A) [Bacillus sp. FSL W8-0812]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCAGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATTTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAGTTCATCGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment