Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NSQ42_RS11250 Genome accession   NZ_CP150184
Coordinates   2202045..2202665 (+) Length   206 a.a.
NCBI ID   WP_015714153.1    Uniprot ID   A0A8E0VT51
Organism   Bacillus sp. FSL W8-0812     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2197045..2207665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ42_RS11210 (NSQ42_11210) - 2198176..2198682 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  NSQ42_RS11215 (NSQ42_11215) - 2198820..2199239 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  NSQ42_RS11220 (NSQ42_11220) - 2199260..2199637 (-) 378 WP_004398696.1 YppG family protein -
  NSQ42_RS11225 (NSQ42_11225) - 2199825..2200013 (+) 189 WP_140599951.1 YppF family protein -
  NSQ42_RS11230 (NSQ42_11230) - 2200052..2200423 (-) 372 WP_195727830.1 YppE family protein -
  NSQ42_RS11235 (NSQ42_11235) - 2200469..2200714 (-) 246 WP_004398488.1 YppD family protein -
  NSQ42_RS11240 (NSQ42_11240) sspM 2200913..2201017 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  NSQ42_RS11245 (NSQ42_11245) - 2201042..2202004 (-) 963 WP_015383945.1 DUF2515 domain-containing protein -
  NSQ42_RS11250 (NSQ42_11250) recU 2202045..2202665 (+) 621 WP_015714153.1 Holliday junction resolvase RecU Machinery gene
  NSQ42_RS11255 (NSQ42_11255) - 2202687..2205431 (+) 2745 WP_088467250.1 PBP1A family penicillin-binding protein -
  NSQ42_RS11260 (NSQ42_11260) - 2205507..2206001 (-) 495 WP_015714154.1 YpoC family protein -
  NSQ42_RS11265 (NSQ42_11265) nth 2205998..2206657 (-) 660 WP_009967580.1 endonuclease III -
  NSQ42_RS11270 (NSQ42_11270) dnaD 2206676..2207374 (-) 699 WP_015714155.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23915.08 Da        Isoelectric Point: 9.7224

>NTDB_id=965359 NSQ42_RS11250 WP_015714153.1 2202045..2202665(+) (recU) [Bacillus sp. FSL W8-0812]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHAHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=965359 NSQ42_RS11250 WP_015714153.1 2202045..2202665(+) (recU) [Bacillus sp. FSL W8-0812]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGCCCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995

Multiple sequence alignment