Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   NSQ42_RS05910 Genome accession   NZ_CP150184
Coordinates   1133243..1133821 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-0812     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1128243..1138821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ42_RS05890 (NSQ42_05890) hemAT 1128754..1130052 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  NSQ42_RS05895 (NSQ42_05895) - 1130191..1131720 (-) 1530 WP_019712353.1 FAD-dependent oxidoreductase -
  NSQ42_RS05900 (NSQ42_05900) - 1131832..1132689 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  NSQ42_RS05905 (NSQ42_05905) - 1132717..1132950 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  NSQ42_RS05910 (NSQ42_05910) comK 1133243..1133821 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  NSQ42_RS05915 (NSQ42_05915) - 1133868..1134767 (-) 900 WP_032721273.1 SDR family oxidoreductase -
  NSQ42_RS05920 (NSQ42_05920) - 1134984..1135253 (+) 270 WP_017695342.1 excalibur calcium-binding domain-containing protein -
  NSQ42_RS05925 (NSQ42_05925) - 1135296..1136765 (-) 1470 WP_032721274.1 sodium:solute symporter -
  NSQ42_RS05930 (NSQ42_05930) - 1136762..1136962 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  NSQ42_RS05935 (NSQ42_05935) - 1137170..1137532 (-) 363 WP_024571727.1 hypothetical protein -
  NSQ42_RS05940 (NSQ42_05940) - 1137684..1138307 (+) 624 WP_010886465.1 VTT domain-containing protein -
  NSQ42_RS05945 (NSQ42_05945) lepB 1138309..1138815 (+) 507 WP_032721278.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=965340 NSQ42_RS05910 WP_029317573.1 1133243..1133821(+) (comK) [Bacillus sp. FSL W8-0812]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=965340 NSQ42_RS05910 WP_029317573.1 1133243..1133821(+) (comK) [Bacillus sp. FSL W8-0812]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment