Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACJRRB_RS02970 Genome accession   NZ_CP174526
Coordinates   628301..629293 (-) Length   330 a.a.
NCBI ID   WP_000224456.1    Uniprot ID   -
Organism   Escherichia coli strain NEBExpress(lowRF1)     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 623301..634293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJRRB_RS02960 yieP 626193..626885 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  ACJRRB_RS02965 mdtD 626908..628335 (+) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  ACJRRB_RS02970 cytR 628301..629293 (-) 993 WP_000224456.1 ribose operon transcriptional repressor RbsR Regulator
  ACJRRB_RS02975 rbsK 629297..630226 (-) 930 WP_012767772.1 ribokinase -
  ACJRRB_RS02980 rbsB 630352..631242 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  ACJRRB_RS02985 rbsC 631267..632232 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  ACJRRB_RS02990 rbsA 632237..633742 (-) 1506 WP_000387752.1 ribose ABC transporter ATP-binding protein RbsA -
  ACJRRB_RS02995 rbsD 633750..633986 (-) 237 Protein_565 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36563.82 Da        Isoelectric Point: 5.0711

>NTDB_id=965334 ACJRRB_RS02970 WP_000224456.1 628301..629293(-) (cytR) [Escherichia coli strain NEBExpress(lowRF1)]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGDSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=965334 ACJRRB_RS02970 WP_000224456.1 628301..629293(-) (cytR) [Escherichia coli strain NEBExpress(lowRF1)]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTGATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCAACTCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.747

100

0.37
  cytR Vibrio cholerae C6706

38.762

93.03

0.361