Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NSQ42_RS01970 Genome accession   NZ_CP150184
Coordinates   371488..371937 (-) Length   149 a.a.
NCBI ID   WP_157678489.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-0812     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 366488..376937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ42_RS01935 (NSQ42_01935) - 366763..367443 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  NSQ42_RS01940 (NSQ42_01940) - 367453..368316 (-) 864 WP_029727074.1 transporter substrate-binding domain-containing protein -
  NSQ42_RS01945 (NSQ42_01945) - 368478..368670 (+) 193 Protein_339 hypothetical protein -
  NSQ42_RS01950 (NSQ42_01950) - 368706..369026 (+) 321 Protein_340 RDD family protein -
  NSQ42_RS01955 (NSQ42_01955) - 369108..369440 (+) 333 WP_015252849.1 YckD family protein -
  NSQ42_RS01960 (NSQ42_01960) bglC 369593..371026 (+) 1434 WP_032722901.1 6-phospho-beta-glucosidase -
  NSQ42_RS01965 (NSQ42_01965) nin/comJ 371063..371461 (-) 399 WP_032722902.1 DNA-entry nuclease inhibitor Regulator
  NSQ42_RS01970 (NSQ42_01970) nucA/comI 371488..371937 (-) 450 WP_157678489.1 DNA-entry nuclease Machinery gene
  NSQ42_RS01975 (NSQ42_01975) tlpC 372105..373826 (-) 1722 WP_003246498.1 methyl-accepting chemotaxis protein TlpC -
  NSQ42_RS01980 (NSQ42_01980) hxlB 373937..374494 (-) 558 WP_003246343.1 6-phospho-3-hexuloisomerase -
  NSQ42_RS01985 (NSQ42_01985) hxlA 374500..375132 (-) 633 WP_003246452.1 3-hexulose-6-phosphate synthase -
  NSQ42_RS01990 (NSQ42_01990) hxlR 375365..375727 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16458.43 Da        Isoelectric Point: 4.5282

>NTDB_id=965329 NSQ42_RS01970 WP_157678489.1 371488..371937(-) (nucA/comI) [Bacillus sp. FSL W8-0812]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETMAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=965329 NSQ42_RS01970 WP_157678489.1 371488..371937(-) (nucA/comI) [Bacillus sp. FSL W8-0812]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATGGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

99.329

100

0.993

Multiple sequence alignment