Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NSQ36_RS11025 Genome accession   NZ_CP150182
Coordinates   2200743..2202479 (-) Length   578 a.a.
NCBI ID   WP_251190329.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-1143     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2195743..2207479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ36_RS11010 (NSQ36_11010) - 2196621..2197721 (-) 1101 WP_003215741.1 Rap family tetratricopeptide repeat protein -
  NSQ36_RS11015 (NSQ36_11015) spo0A 2198178..2198981 (-) 804 WP_003215740.1 sporulation transcription factor Spo0A Regulator
  NSQ36_RS11020 (NSQ36_11020) spoIVB 2199267..2200544 (-) 1278 WP_106033130.1 SpoIVB peptidase -
  NSQ36_RS11025 (NSQ36_11025) recN 2200743..2202479 (-) 1737 WP_251190329.1 DNA repair protein RecN Machinery gene
  NSQ36_RS11030 (NSQ36_11030) argR 2202513..2202962 (-) 450 WP_003215836.1 transcriptional regulator ArgR -
  NSQ36_RS11035 (NSQ36_11035) - 2203122..2203976 (-) 855 WP_251190328.1 TlyA family RNA methyltransferase -
  NSQ36_RS11040 (NSQ36_11040) dxs 2203973..2205874 (-) 1902 WP_106029158.1 1-deoxy-D-xylulose-5-phosphate synthase -
  NSQ36_RS11045 (NSQ36_11045) - 2206025..2206915 (-) 891 WP_106067132.1 polyprenyl synthetase family protein -
  NSQ36_RS11050 (NSQ36_11050) - 2206905..2207165 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64811.62 Da        Isoelectric Point: 4.8146

>NTDB_id=965294 NSQ36_RS11025 WP_251190329.1 2200743..2202479(-) (recN) [Bacillus sp. FSL W8-1143]
MLAELTIKNYAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPAADHPVFAL
CEEHGIDATDEMMILRRDMNNNGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPAL
SQYQEAYEQYTKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNYEKIFSSLQNAYNALRN
EQGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDLIESRLNEMKQLKRKYGTT
VEEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSTFDTSFS
IRYAPFSSTDNPLLDGKPVQLGKNGIDQAQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDT
GVSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELT
KQHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=965294 NSQ36_RS11025 WP_251190329.1 2200743..2202479(-) (recN) [Bacillus sp. FSL W8-1143]
GTGTTAGCAGAACTAACCATTAAAAACTATGCAATCATTGAAGAGTTAACAGTTTCATTTGAAAAAGGACTCACAGTCCT
AACAGGGGAAACAGGTGCAGGGAAATCCATCATGATTGATGCTGTCTCACTTCTTGTGGGAGGTAGAGGGTCGTCTGAAT
TTGTTCGTTATGGTGAGAAAAAGGCTGAGCTGGAGGGGCTTTTTCTTGTGCCAGCAGCTGACCACCCTGTATTTGCTTTA
TGCGAAGAGCATGGAATTGACGCAACGGATGAAATGATGATTCTTCGCCGTGATATGAACAATAACGGGAAAAGCATATG
CCGCATCAATGGCAAGCTCGTTACAATCTCACTTTTACGCGAAGTAGGACGCCTTTTGCTCGATATACATGGACAGCACG
ATAACCAGTTATTGATGGAGGATGAAAATCATCTGCATTTACTCGATCAATTTGGAGCAGAAGAAATTGCACCTGCTCTG
TCACAATATCAAGAAGCATATGAGCAATATACAAAGACAGCCCAAAAGCTAAAACAGCTCTCTGAGAATGAGCAGGAAAT
GGTGCACCGGTTAGATTTACTGCAATTTCAGCTAGAAGAGATTGAAGCGGCACAATTAGAGCCGGGAGAAGATGAGAAGC
TTCAAGAAGAGCGCCATCAGATCAGCAACTACGAAAAAATCTTTTCCTCACTCCAAAACGCCTATAATGCCTTGCGCAAT
GAGCAGGGGGGACTTGATTGGGTTGGCATGTCATCGAGCGAGCTCGAGCAGGTTTCTGAGATCAACGACGATCTGAAAAA
GCTATCAGAACAAGTGTCGAACTCTTACTATTTATTAGAGGATTCGACGTTCCAAATGCGAAGCATGCTGGATCAATTAG
AGTTCGACCCAGCACGTCTTGATTTAATTGAGTCTAGGCTGAATGAAATGAAGCAGTTAAAACGAAAGTACGGGACAACG
GTTGAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATCGATCAAATTCAAAATCGAGACAGTCACCTGCAGAC
GCTTAAAAACAAACTGGATGCAATGAGCCGTGACGCCTTGCTTGAAGCACTTAACGTTTCGGAGCTTCGTAAAAAATGGG
CCAAAAAGCTAGCGAAGCAAATTCAAACAGAACTAAAGGATTTGTATATGGAGAAGTCGACGTTTGATACATCCTTTTCC
ATTCGGTATGCGCCTTTTAGCAGCACGGATAATCCGCTGCTAGATGGAAAGCCCGTCCAGCTTGGAAAAAACGGAATCGA
CCAAGCTCAATTTGTGATTTCTACTAATCCTGGCGAACCGATGAAATCTTTATCAAAAGTTGCCTCGGGTGGAGAAATTT
CACGTGTTATGCTCGCCGTGAAAAGTATCTTCTCGGCCAAACAAGAAGTCACTTCCATTATTTTCGATGAGGTCGATACG
GGCGTAAGCGGCAGAGTTGCACAGGCGATTGCCGAAAAAATTTACAAAGTGGCGGCTGGCTCACAAGTGCTCTGCATTAC
GCACCTCCCGCAAGTAGCAGCAATGGCTGACACGCACCTCTTCATTTCTAAACGCTCTAAAGCAGGCAGAACACTGACAA
GCGTCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGTAGGATGATTGCGGGTGTGGAAGTCACTGAACTGACA
AAACAGCACGCAAAAGAATTGCTGCATCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

74.567

100

0.746

Multiple sequence alignment