Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NSQ36_RS06960 Genome accession   NZ_CP150182
Coordinates   1404039..1404317 (+) Length   92 a.a.
NCBI ID   WP_003211634.1    Uniprot ID   A0AB34QPU8
Organism   Bacillus sp. FSL W8-1143     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1399039..1409317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ36_RS06935 (NSQ36_06935) - 1399133..1399408 (-) 276 WP_034619939.1 hypothetical protein -
  NSQ36_RS06940 (NSQ36_06940) - 1399552..1401171 (+) 1620 WP_003212114.1 ATP-binding cassette domain-containing protein -
  NSQ36_RS06945 (NSQ36_06945) - 1401210..1402442 (-) 1233 WP_339207093.1 aminopeptidase -
  NSQ36_RS06950 (NSQ36_06950) - 1402549..1402680 (-) 132 WP_003210922.1 protein YkpC -
  NSQ36_RS06955 (NSQ36_06955) mreBH 1402755..1403762 (-) 1008 WP_003211642.1 rod-share determining protein MreBH -
  NSQ36_RS06960 (NSQ36_06960) abrB 1404039..1404317 (+) 279 WP_003211634.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  NSQ36_RS06965 (NSQ36_06965) - 1404460..1405770 (+) 1311 WP_339207095.1 ATP-binding protein -
  NSQ36_RS06970 (NSQ36_06970) - 1405775..1406611 (+) 837 WP_251191323.1 gamma-glutamylcyclotransferase family protein -
  NSQ36_RS06975 (NSQ36_06975) - 1406649..1407317 (+) 669 WP_003211815.1 TrkA family potassium uptake protein -
  NSQ36_RS06980 (NSQ36_06980) ade 1407581..1409311 (+) 1731 WP_251191322.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10306.01 Da        Isoelectric Point: 4.6909

>NTDB_id=965286 NSQ36_RS06960 WP_003211634.1 1404039..1404317(+) (abrB) [Bacillus sp. FSL W8-1143]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGEKIVLKKYKPEGVCLMTGEITSENHDYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=965286 NSQ36_RS06960 WP_003211634.1 1404039..1404317(+) (abrB) [Bacillus sp. FSL W8-1143]
TTGAAATCTATCGGAGTTGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTAAGAAGAGCACTTGA
TATTGCCATTAAAGACAGTATGGAATTTTTTATAGATGGGGAGAAAATCGTCTTGAAAAAATACAAGCCAGAGGGTGTTT
GCCTCATGACTGGTGAGATTACATCAGAGAACCATGATTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTGCTCTTAAAAGAGCTGCAAGAAGCTCTTCAGCAGTAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.522

100

0.565

Multiple sequence alignment