Detailed information NTG0965279

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACJSOD_RS14310
• Genome accession: NZ_CP174508
• Coordinates: 3078168..3079172 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain KS1-2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3073168..3084172

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJSOD_RS14280 (ACJSOD_14280)	fghA	3073260..3074111 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
ACJSOD_RS14285 (ACJSOD_14285)	ispF	3074182..3074655 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACJSOD_RS14290 (ACJSOD_14290)	truD	3074652..3075719 (+)	1068	WP_031633801.1	tRNA pseudouridine(13) synthase TruD	-
ACJSOD_RS14295 (ACJSOD_14295)	surE	3075707..3076456 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ACJSOD_RS14300 (ACJSOD_14300)	-	3076489..3077124 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACJSOD_RS14305 (ACJSOD_14305)	-	3077170..3078063 (+)	894	WP_023089397.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACJSOD_RS14310 (ACJSOD_14310)	rpoS	3078168..3079172 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
ACJSOD_RS14315 (ACJSOD_14315)	fdxA	3079599..3079922 (-)	324	WP_003092272.1	ferredoxin FdxA	-
ACJSOD_RS14320 (ACJSOD_14320)	mutS	3079989..3082556 (-)	2568	WP_408014445.1	DNA mismatch repair protein MutS	-
ACJSOD_RS14325 (ACJSOD_14325)	-	3082682..3083688 (-)	1007	Protein_2820	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=965279 ACJSOD_RS14310 WP_003113871.1 3078168..3079172(+) (rpoS) [Pseudomonas aeruginosa strain KS1-2]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=965279 ACJSOD_RS14310 WP_003113871.1 3078168..3079172(+) (rpoS) [Pseudomonas aeruginosa strain KS1-2]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653