Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NSQ36_RS01995 Genome accession   NZ_CP150182
Coordinates   366155..366583 (-) Length   142 a.a.
NCBI ID   WP_339206598.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-1143     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 361155..371583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ36_RS01965 (NSQ36_01965) - 361311..361640 (+) 330 WP_050943461.1 YckD family protein -
  NSQ36_RS01970 (NSQ36_01970) - 361690..362454 (-) 765 WP_251191150.1 MBL fold metallo-hydrolase -
  NSQ36_RS01975 (NSQ36_01975) - 362570..362986 (+) 417 WP_003214483.1 winged helix-turn-helix transcriptional regulator -
  NSQ36_RS01980 (NSQ36_01980) - 363016..363822 (+) 807 WP_137055254.1 AAC(3) family N-acetyltransferase -
  NSQ36_RS01985 (NSQ36_01985) - 363824..364210 (-) 387 WP_003213827.1 competence protein ComJ -
  NSQ36_RS01990 (NSQ36_01990) - 364331..366028 (-) 1698 WP_212046226.1 methyl-accepting chemotaxis protein -
  NSQ36_RS01995 (NSQ36_01995) nucA/comI 366155..366583 (-) 429 WP_339206598.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NSQ36_RS02000 (NSQ36_02000) - 366951..369020 (+) 2070 WP_251191149.1 hydantoinase/oxoprolinase family protein -
  NSQ36_RS02005 (NSQ36_02005) - 369010..370995 (+) 1986 WP_251191148.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15884.86 Da        Isoelectric Point: 5.9121

>NTDB_id=965267 NSQ36_RS01995 WP_339206598.1 366155..366583(-) (nucA/comI) [Bacillus sp. FSL W8-1143]
MKLLKIILLLLLIVVGVATGYIQLVQSKQETTNSSYDKTIHFPSERYPETAKHIEEAIDEGHSSVCTIDRKHSDEQREQS
LHGIPTKRGYDRDEWPMAMCKEGGTGASVKYISPSDNRGAGSWVGHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=965267 NSQ36_RS01995 WP_339206598.1 366155..366583(-) (nucA/comI) [Bacillus sp. FSL W8-1143]
ATGAAACTTCTTAAAATCATTCTCTTGCTTTTACTGATCGTCGTTGGTGTAGCAACAGGCTATATTCAGCTGGTGCAAAG
TAAACAAGAGACGACGAATTCATCTTATGACAAGACCATTCACTTCCCATCAGAACGTTACCCTGAAACCGCGAAGCACA
TAGAAGAGGCAATTGATGAAGGGCATTCATCCGTATGCACGATTGACCGTAAACATAGCGATGAACAAAGAGAACAATCA
CTTCATGGCATCCCAACAAAGCGCGGGTATGATCGGGACGAATGGCCGATGGCGATGTGTAAGGAAGGAGGAACAGGAGC
TTCAGTCAAATATATTAGTCCTTCAGATAATAGAGGAGCCGGCTCATGGGTCGGTCATCAATTATCGGATGATCCTGACG
GTACAAGAATACAATTTATCATCGATTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

67.227

83.803

0.563

Multiple sequence alignment