Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NYE40_RS10030 Genome accession   NZ_CP150181
Coordinates   2365664..2366059 (-) Length   131 a.a.
NCBI ID   WP_028599611.1    Uniprot ID   A0A5Q2NZD9
Organism   Paenibacillus sp. FSL W8-1187     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2360664..2371059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE40_RS10025 (NYE40_10025) comJ 2365091..2365576 (-) 486 WP_153783426.1 competence protein ComJ -
  NYE40_RS10030 (NYE40_10030) nucA/comI 2365664..2366059 (-) 396 WP_028599611.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NYE40_RS10035 (NYE40_10035) - 2366338..2367810 (+) 1473 WP_164820099.1 HAMP domain-containing sensor histidine kinase -
  NYE40_RS10040 (NYE40_10040) - 2367845..2368468 (-) 624 WP_339279854.1 response regulator transcription factor -
  NYE40_RS10045 (NYE40_10045) - 2368769..2369095 (+) 327 WP_028599614.1 hypothetical protein -
  NYE40_RS10050 (NYE40_10050) - 2369139..2370206 (+) 1068 WP_043111535.1 phage tail sheath subtilisin-like domain-containing protein -
  NYE40_RS10055 (NYE40_10055) - 2370240..2370680 (+) 441 WP_028599616.1 phage tail tube protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14021.67 Da        Isoelectric Point: 5.7002

>NTDB_id=965243 NYE40_RS10030 WP_028599611.1 2365664..2366059(-) (nucA/comI) [Paenibacillus sp. FSL W8-1187]
MLAFMAALFPGASVRTEAAAGYDAVIYFPFDRYPLTGDHIRDAIADGHSAICTIDRAGADANRKESLKGIPTKSGYDRDE
WPMAMCDEGGAGADVRYVPSSDNRGAGAWVGNQLSSYANGKRIKFVMSYGS

Nucleotide


Download         Length: 396 bp        

>NTDB_id=965243 NYE40_RS10030 WP_028599611.1 2365664..2366059(-) (nucA/comI) [Paenibacillus sp. FSL W8-1187]
ATGCTCGCCTTTATGGCGGCGCTGTTTCCGGGCGCTTCCGTCCGGACCGAGGCGGCAGCCGGCTATGACGCCGTCATTTA
TTTTCCGTTCGACCGCTACCCGCTGACCGGCGATCATATCCGCGACGCGATCGCGGACGGGCATTCGGCGATCTGCACGA
TCGATCGGGCCGGCGCGGACGCGAACCGCAAGGAGTCGCTCAAGGGCATCCCGACCAAAAGCGGCTACGACCGCGACGAA
TGGCCGATGGCGATGTGCGACGAAGGCGGTGCAGGCGCGGACGTGCGCTACGTGCCGTCCTCCGACAACCGCGGCGCAGG
GGCATGGGTCGGCAACCAGCTTTCCTCGTACGCGAACGGCAAGCGGATCAAGTTTGTCATGTCCTACGGCAGCTGA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(34-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q2NZD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

54.167

91.603

0.496

Multiple sequence alignment