Detailed information NTG0965181

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: ACJQW0_RS14270
• Genome accession: NZ_CP174507
• Coordinates: 2874825..2876252 (+)
• Length: 475 a.a.
• NCBI ID: WP_000980589.1
• Uniprot ID: P04995
• Organism: Escherichia coli strain Trp01
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2869825..2881252

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJQW0_RS14230	yeeW	2870009..2870203 (+)	195	WP_000988600.1	DUF5983 family protein	-
ACJQW0_RS14235	-	2870237..2870329 (+)	93	Protein_2782	DUF957 domain-containing protein	-
ACJQW0_RS14240	-	2870618..2870746 (-)	129	Protein_2783	transposase domain-containing protein	-
ACJQW0_RS14245	-	2870818..2871000 (+)	183	WP_001016348.1	EutP/PduV family microcompartment system protein	-
ACJQW0_RS14250	tmaR	2871101..2871430 (-)	330	WP_000450409.1	DUF496 family protein	-
ACJQW0_RS14255	yeeA	2871602..2872660 (-)	1059	WP_001200891.1	FUSC family protein	-
ACJQW0_RS14260	sbmC	2872858..2873331 (-)	474	WP_001105415.1	DNA gyrase inhibitor SbmC	-
ACJQW0_RS14265	dacD	2873450..2874616 (-)	1167	WP_000830156.1	serine-type D-Ala-D-Ala carboxypeptidase DacD	-
ACJQW0_RS14270	sbcB	2874825..2876252 (+)	1428	WP_000980589.1	exodeoxyribonuclease I	Machinery gene
ACJQW0_RS14275	tsuB	2876295..2876522 (-)	228	WP_000234896.1	thiosulfate utilization sulfurtransferase TsuB/YeeD	-
ACJQW0_RS14280	tsuA	2876536..2877594 (-)	1059	WP_000492339.1	thiosulfate utilization transporter TsuA/YeeE	-
ACJQW0_RS14285	plaP	2877773..2879131 (-)	1359	WP_000019197.1	putrescine/proton symporter PlaP	-
ACJQW0_RS14290	yoeI	2879121..2879183 (-)	63	WP_010723108.1	membrane protein YoeI	-
ACJQW0_RS14295	yeeY	2879398..2880327 (-)	930	WP_000803351.1	LysR substrate-binding domain-containing protein	-
ACJQW0_RS14300	yeeZ	2880373..2881197 (-)	825	WP_000754737.1	SDR family oxidoreductase	-

Sequence

Protein

• Length: 475 a.a.
• Molecular weight: 54500.81 Da
• Isoelectric Point: 5.4700

>NTDB_id=965181 ACJQW0_RS14270 WP_000980589.1 2874825..2876252(+) (sbcB) [Escherichia coli strain Trp01]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide

• Length: 1428 bp

>NTDB_id=965181 ACJQW0_RS14270 WP_000980589.1 2874825..2876252(+) (sbcB) [Escherichia coli strain Trp01]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGTCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

• Exonuclease (RNase_T) (13-188)

• Exonuclease C-terminal (ExoI_SH3) (212-472)

3D structure

• PDB: 1FXX
• PDB: 2QXF
• PDB: 3C94
• PDB: 3C95
• PDB: 3HL8
• PDB: 3HP9
• PDB: 4HCB
• PDB: 4HCC
• PDB: 4JRP
• PDB: 4JRQ
• PDB: 4JS4
• PDB: 4JS5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	59.149	98.947	0.585