Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NSQ23_RS05570 Genome accession   NZ_CP150179
Coordinates   1047409..1049139 (+) Length   576 a.a.
NCBI ID   WP_339173589.1    Uniprot ID   -
Organism   Anoxybacillus sp. FSL W8-1294     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1042409..1054139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ23_RS05545 (NSQ23_05545) - 1042852..1043064 (+) 213 WP_004889602.1 exodeoxyribonuclease VII small subunit -
  NSQ23_RS05550 (NSQ23_05550) - 1043067..1043939 (+) 873 WP_339173584.1 polyprenyl synthetase family protein -
  NSQ23_RS05555 (NSQ23_05555) dxs 1044109..1046001 (+) 1893 WP_064214089.1 1-deoxy-D-xylulose-5-phosphate synthase -
  NSQ23_RS05560 (NSQ23_05560) - 1046005..1046847 (+) 843 WP_064214090.1 TlyA family RNA methyltransferase -
  NSQ23_RS05565 (NSQ23_05565) argR 1046941..1047390 (+) 450 WP_339173587.1 transcriptional regulator ArgR -
  NSQ23_RS05570 (NSQ23_05570) recN 1047409..1049139 (+) 1731 WP_339173589.1 DNA repair protein RecN Machinery gene
  NSQ23_RS05575 (NSQ23_05575) spoIVB 1049255..1050532 (+) 1278 WP_339173592.1 SpoIVB peptidase -
  NSQ23_RS05580 (NSQ23_05580) spo0A 1050750..1051529 (+) 780 WP_004889612.1 sporulation transcription factor Spo0A -
  NSQ23_RS05585 (NSQ23_05585) - 1051552..1051698 (-) 147 WP_064498956.1 YycC family protein -
  NSQ23_RS05590 (NSQ23_05590) - 1051754..1052488 (+) 735 WP_339173596.1 glycerophosphodiester phosphodiesterase -
  NSQ23_RS05595 (NSQ23_05595) - 1052480..1052734 (-) 255 WP_339173598.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 65691.66 Da        Isoelectric Point: 4.8162

>NTDB_id=965178 NSQ23_RS05570 WP_339173589.1 1047409..1049139(+) (recN) [Anoxybacillus sp. FSL W8-1294]
MLAELSIKNFAIIESLSLSFEKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRYGETKAEIEGLFLLEQDDHPCYSK
CAELGIDISDGMIVLRRELTINGKSVCRVNGKLVTIATLREIGSTLVDIHGQHEHQELLDENKHLYLLDEYGGERIRDAL
EEYKALYAAYERVKRQLQKLNENEQQMAHRLDLLTFQLDEIQKAELQLDEDEQLMEERRKIVNFQKIYEALQSSYEALYG
EQRGLDWIGLVMNHLDHVSEIDSSLKQAQEVVSNCYYLLEEVAHQLREQLDQLEYDPLRLDEIESRLNEINHLKRKYGQT
VRDILEYAAKVEEEIETIQHRDDHIHKLQTELQSITADLLVEAKHISELRMQYAKQLIDDIHQELKDLYMEKTTFDVVFR
KPQGTYDDPLLDGTPVKLQSNGIDEVEFYISTNPGEPLKPLAKVASGGELSRMMLALKSIFSKHQGVTSIIFDEVDTGVS
GRVAQSIAEKIYRVARHSQVLCISHLPQVAAMADTHLFIAKETIDGRTKTTVEALNEEEKINEISRMISGVEITDLTKQH
ARELLQLAKKIKNETT

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=965178 NSQ23_RS05570 WP_339173589.1 1047409..1049139(+) (recN) [Anoxybacillus sp. FSL W8-1294]
ATGTTAGCGGAGTTATCTATCAAAAACTTTGCCATTATTGAATCCCTTTCGCTTTCGTTTGAAAAAGGATTAACCGTTTT
AACTGGAGAAACGGGAGCGGGAAAATCCATTATTATTGATGCCATTCATTTGTTAATTGGCGGACGCGGCTCAGCAGAAT
TTGTTCGATACGGCGAAACAAAAGCGGAAATCGAAGGTCTTTTTTTGCTTGAACAAGATGATCACCCGTGTTACAGCAAA
TGTGCCGAGCTTGGCATCGATATAAGCGATGGGATGATTGTGCTTCGTCGAGAGCTAACGATAAACGGAAAAAGCGTCTG
TCGCGTGAACGGAAAGTTAGTCACGATCGCGACATTGCGTGAAATTGGTTCCACACTTGTAGATATTCACGGACAACATG
AGCATCAAGAATTGCTTGATGAAAATAAGCATTTATATTTATTAGATGAATATGGAGGCGAGCGTATTCGTGACGCATTA
GAGGAATATAAAGCTTTATATGCGGCGTACGAGCGAGTCAAGCGTCAACTGCAAAAGTTAAATGAGAATGAGCAACAAAT
GGCGCATCGTTTAGATTTATTAACTTTTCAGTTAGATGAAATTCAAAAAGCAGAGCTACAGTTAGATGAAGATGAACAGC
TAATGGAAGAGCGGCGAAAAATCGTTAACTTTCAGAAAATATACGAGGCGTTACAAAGTAGCTATGAAGCGCTTTACGGG
GAGCAACGCGGACTTGATTGGATTGGATTAGTGATGAATCATTTAGATCATGTGAGCGAAATCGATTCATCGTTGAAACA
AGCTCAAGAAGTTGTATCGAACTGTTATTATTTGTTAGAAGAAGTGGCCCATCAACTGCGTGAGCAATTAGATCAATTAG
AATACGATCCGCTTCGACTTGATGAAATTGAAAGTCGCTTAAATGAAATTAACCATTTGAAACGCAAATACGGCCAAACA
GTACGTGACATCTTAGAATATGCGGCGAAAGTGGAAGAAGAAATTGAAACGATTCAACACCGCGATGACCATATTCATAA
ATTGCAGACCGAACTTCAATCCATCACGGCTGATTTATTAGTTGAAGCGAAACATATAAGCGAATTGCGTATGCAATATG
CGAAACAACTGATCGACGACATTCATCAAGAGCTAAAAGATTTATACATGGAAAAAACGACGTTTGATGTTGTTTTTCGA
AAACCTCAAGGAACGTACGATGATCCATTGCTTGACGGAACGCCTGTAAAGTTGCAATCAAACGGAATAGATGAAGTTGA
ATTTTACATTTCGACAAATCCAGGCGAGCCGTTAAAACCGCTTGCGAAAGTTGCATCAGGCGGAGAATTGTCGCGCATGA
TGCTTGCTTTAAAAAGTATTTTTTCTAAACATCAAGGCGTCACTTCCATCATTTTTGATGAAGTCGATACCGGTGTAAGC
GGTCGCGTTGCTCAATCCATTGCGGAAAAAATTTATCGCGTGGCACGCCATTCGCAAGTATTATGCATTTCGCACTTACC
ACAAGTGGCAGCAATGGCCGATACGCATTTATTTATTGCAAAAGAAACGATAGACGGGCGAACAAAAACGACCGTCGAAG
CGCTAAATGAAGAAGAAAAAATTAACGAAATTAGCCGTATGATTTCTGGAGTGGAGATTACAGACTTAACGAAACAGCAT
GCACGTGAGTTATTGCAATTAGCTAAAAAGATCAAAAACGAAACAACATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

63.13

99.826

0.63

Multiple sequence alignment