Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NSQ23_RS00525 Genome accession   NZ_CP150179
Coordinates   101899..103293 (+) Length   464 a.a.
NCBI ID   WP_004888620.1    Uniprot ID   A0A1V3FDZ6
Organism   Anoxybacillus sp. FSL W8-1294     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 96899..108293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ23_RS00505 (NSQ23_00505) - 97297..97758 (+) 462 WP_004888615.1 CtsR family transcriptional regulator -
  NSQ23_RS00510 (NSQ23_00510) - 97773..98318 (+) 546 WP_192948625.1 UvrB/UvrC motif-containing protein -
  NSQ23_RS00515 (NSQ23_00515) - 98323..99387 (+) 1065 WP_004888618.1 protein arginine kinase -
  NSQ23_RS00520 (NSQ23_00520) clpC 99408..101840 (+) 2433 WP_192948626.1 ATP-dependent protease ATP-binding subunit ClpC -
  NSQ23_RS00525 (NSQ23_00525) radA 101899..103293 (+) 1395 WP_004888620.1 DNA repair protein RadA Machinery gene
  NSQ23_RS00530 (NSQ23_00530) - 103383..104471 (+) 1089 WP_339172220.1 PIN/TRAM domain-containing protein -
  NSQ23_RS00535 (NSQ23_00535) ispD 104491..105177 (+) 687 WP_339172222.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  NSQ23_RS00540 (NSQ23_00540) ispF 105177..105659 (+) 483 WP_339172224.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  NSQ23_RS00545 (NSQ23_00545) gltX 105723..107183 (+) 1461 WP_339172226.1 glutamate--tRNA ligase -
  NSQ23_RS00550 (NSQ23_00550) cysE 107499..108164 (+) 666 WP_009361476.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50931.81 Da        Isoelectric Point: 7.7721

>NTDB_id=965164 NSQ23_RS00525 WP_004888620.1 101899..103293(+) (radA) [Anoxybacillus sp. FSL W8-1294]
MVKRKTKFVCQHCGYETAKWMGKCPGCHSWNAMVEETEIVKPHTRALFVHTEGGTTKPVSITTVETTQEPRIDTKFTEFN
RVLGGGIVRGSLVLIGGDPGIGKSTLLLQICAQLASDDYSVLYISGEESVKQTKLRAERLHVTAKHLYVLSETNLEHIIQ
TVDEMKPAFVVIDSIQTIYRSEITSAPGSVSQVRECTAELMRLAKTKGIAIFIVGHVTKEGALAGPRILEHMVDTVLYFE
GERHHTYRILRAVKNRFGSTNEIGIFEMKEMGLTEVKNPSEIFLEERSKGAAGSTVVASMEGTRPVLVEIQALVSPTSFG
TPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGIKLDEPAIDLAIAVSIASSFRDQPTNHTDVVIGEVGLTG
EVRRVSRIEQRVQEAAKLGFQRIIIPKSNIGGWNIPKGVEIIGIANVEEALYYALGEGKNGPIF

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=965164 NSQ23_RS00525 WP_004888620.1 101899..103293(+) (radA) [Anoxybacillus sp. FSL W8-1294]
ATGGTTAAGCGGAAAACAAAGTTCGTTTGCCAACATTGTGGATATGAAACGGCGAAATGGATGGGGAAATGTCCGGGGTG
CCATTCGTGGAATGCGATGGTTGAAGAAACAGAAATAGTAAAACCACACACCCGAGCATTATTTGTGCATACAGAAGGTG
GAACAACTAAACCTGTATCGATTACAACGGTGGAAACAACGCAGGAGCCGAGAATTGATACGAAGTTTACAGAATTTAAC
CGCGTGTTAGGAGGCGGCATTGTTCGTGGTTCTCTCGTTTTGATTGGGGGGGATCCGGGTATTGGAAAATCGACGTTGTT
GCTACAAATTTGCGCTCAACTTGCAAGCGATGACTACTCCGTTTTATATATTTCGGGGGAAGAATCGGTAAAACAAACGA
AGTTGCGTGCTGAACGGTTGCATGTGACAGCTAAACATTTATACGTTTTATCTGAAACAAACTTAGAACATATTATCCAA
ACGGTTGACGAGATGAAGCCAGCGTTTGTCGTTATTGATTCCATCCAAACGATATATCGATCAGAAATTACATCGGCCCC
AGGGAGCGTTTCACAAGTTCGTGAATGTACGGCAGAGTTAATGAGACTAGCTAAAACAAAAGGTATTGCGATTTTTATAG
TTGGGCATGTTACAAAAGAAGGAGCGCTTGCAGGACCGCGCATTTTAGAACATATGGTTGATACTGTATTATATTTTGAG
GGAGAGCGTCATCATACGTATCGCATTTTACGGGCAGTGAAAAATCGATTCGGTTCCACAAACGAAATCGGTATTTTCGA
AATGAAAGAAATGGGGCTTACTGAAGTCAAAAACCCGTCGGAAATTTTTTTAGAAGAGCGTTCGAAAGGTGCAGCTGGCT
CAACGGTCGTCGCTTCCATGGAGGGAACAAGACCGGTATTAGTGGAAATTCAAGCATTAGTATCGCCAACTAGCTTTGGA
ACGCCACGTCGAATGGCGACAGGAATAGACCATAATCGCGTATCTTTACTAATGGCTGTGCTTGAAAAAAGAGTTGGTCT
GCTTCTTCAAAACCAAGATGCATATTTAAAGGTGGCTGGTGGCATAAAGTTAGATGAACCTGCGATTGACTTAGCGATTG
CGGTAAGCATTGCATCTAGCTTTCGAGATCAACCGACAAATCATACGGACGTTGTAATCGGGGAAGTTGGATTAACAGGG
GAAGTGCGTCGTGTCTCCCGCATTGAACAGCGTGTACAAGAAGCTGCTAAACTTGGCTTTCAGCGCATCATTATTCCGAA
AAGCAACATCGGTGGGTGGAACATTCCAAAAGGTGTTGAAATCATCGGAATAGCTAATGTCGAAGAGGCGCTATACTACG
CATTAGGGGAAGGGAAAAATGGTCCAATATTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V3FDZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

75.492

98.491

0.744
  radA Streptococcus pneumoniae Rx1

62.749

97.198

0.61
  radA Streptococcus pneumoniae D39

62.749

97.198

0.61
  radA Streptococcus pneumoniae R6

62.749

97.198

0.61
  radA Streptococcus pneumoniae TIGR4

62.749

97.198

0.61
  radA Streptococcus mitis NCTC 12261

62.749

97.198

0.61
  radA Streptococcus mitis SK321

62.528

97.198

0.608

Multiple sequence alignment