Detailed information
Bioinformatically predicted
Overview
| Name | nucA/comI | Type | Machinery gene |
| Locus tag | NST58_RS24775 | Genome accession | NZ_CP150178 |
| Coordinates | 5523806..5524243 (+) | Length | 145 a.a. |
| NCBI ID | WP_076302541.1 | Uniprot ID | - |
| Organism | Paenibacillus sp. FSL R10-2796 | ||
| Function | cleavage of dsDNA into ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 5507493..5528785 | 5523806..5524243 | within | 0 |
Gene organization within MGE regions
Location: 5507493..5528785
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NST58_RS24685 (NST58_24685) | - | 5507493..5508557 (-) | 1065 | WP_076305329.1 | glycoside hydrolase family 130 protein | - |
| NST58_RS24690 (NST58_24690) | - | 5508596..5510137 (-) | 1542 | WP_076305330.1 | DUF3502 domain-containing protein | - |
| NST58_RS24695 (NST58_24695) | - | 5510210..5511091 (-) | 882 | WP_076305331.1 | carbohydrate ABC transporter permease | - |
| NST58_RS24700 (NST58_24700) | - | 5511098..5512036 (-) | 939 | WP_076305332.1 | ABC transporter permease subunit | - |
| NST58_RS24705 (NST58_24705) | - | 5512411..5512635 (+) | 225 | WP_076305333.1 | hypothetical protein | - |
| NST58_RS24710 (NST58_24710) | manA | 5514007..5514951 (+) | 945 | WP_076305334.1 | mannose-6-phosphate isomerase, class I | - |
| NST58_RS24715 (NST58_24715) | - | 5515083..5515481 (+) | 399 | WP_076305335.1 | sigma-70 family RNA polymerase sigma factor | - |
| NST58_RS24720 (NST58_24720) | - | 5515532..5515732 (+) | 201 | WP_076305336.1 | helix-turn-helix domain-containing protein | - |
| NST58_RS24725 (NST58_24725) | - | 5516707..5517918 (+) | 1212 | WP_339244489.1 | site-specific integrase | - |
| NST58_RS24735 (NST58_24735) | - | 5518332..5518808 (-) | 477 | WP_052097266.1 | WGxxGxxG-CTERM domain-containing protein | - |
| NST58_RS24740 (NST58_24740) | - | 5518884..5519570 (-) | 687 | WP_076220018.1 | M15 family metallopeptidase | - |
| NST58_RS24745 (NST58_24745) | - | 5519688..5519852 (+) | 165 | WP_169744799.1 | hypothetical protein | - |
| NST58_RS24750 (NST58_24750) | - | 5519849..5520184 (-) | 336 | WP_076128863.1 | YolD-like family protein | - |
| NST58_RS24755 (NST58_24755) | - | 5520399..5520959 (-) | 561 | WP_076192017.1 | hypothetical protein | - |
| NST58_RS24760 (NST58_24760) | - | 5521077..5521565 (+) | 489 | WP_339244492.1 | PH domain-containing protein | - |
| NST58_RS24765 (NST58_24765) | - | 5521639..5523114 (-) | 1476 | WP_076279279.1 | glycosyl hydrolase | - |
| NST58_RS24770 (NST58_24770) | - | 5523289..5523705 (-) | 417 | WP_038572821.1 | cytidine deaminase | - |
| NST58_RS24775 (NST58_24775) | nucA/comI | 5523806..5524243 (+) | 438 | WP_076302541.1 | NucA/NucB deoxyribonuclease domain-containing protein | Machinery gene |
| NST58_RS24780 (NST58_24780) | - | 5524325..5524474 (-) | 150 | WP_155288175.1 | hypothetical protein | - |
| NST58_RS24785 (NST58_24785) | - | 5524624..5524800 (+) | 177 | WP_076098563.1 | YjfB family protein | - |
| NST58_RS24790 (NST58_24790) | - | 5524964..5525515 (+) | 552 | WP_036683410.1 | ImmA/IrrE family metallo-endopeptidase | - |
| NST58_RS24795 (NST58_24795) | - | 5525582..5525743 (+) | 162 | WP_155288176.1 | hypothetical protein | - |
| NST58_RS24800 (NST58_24800) | - | 5526105..5526440 (+) | 336 | WP_076279280.1 | DUF3139 domain-containing protein | - |
| NST58_RS24805 (NST58_24805) | - | 5526537..5526674 (+) | 138 | Protein_4894 | phosphomethylpyrimidine synthase ThiC | - |
| NST58_RS24810 (NST58_24810) | - | 5527005..5527499 (+) | 495 | WP_076136658.1 | sigma-70 family RNA polymerase sigma factor | - |
| NST58_RS24815 (NST58_24815) | - | 5527496..5528485 (+) | 990 | WP_339244495.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 145 a.a. Molecular weight: 16140.06 Da Isoelectric Point: 4.5847
>NTDB_id=965147 NST58_RS24775 WP_076302541.1 5523806..5524243(+) (nucA/comI) [Paenibacillus sp. FSL R10-2796]
MKVKKWISSLIIVALLALASYWFEQNGEPTDPSSPSDSSVVQLTFPSDRYPETAKHIQDAIAKGESATCTINREQAEENR
KESLKGIPTKKGYDRDEWPMAMCKEGGIGADIEYITPSDNRGAGSWVGNQLEDYADGTRVEFMFK
MKVKKWISSLIIVALLALASYWFEQNGEPTDPSSPSDSSVVQLTFPSDRYPETAKHIQDAIAKGESATCTINREQAEENR
KESLKGIPTKKGYDRDEWPMAMCKEGGIGADIEYITPSDNRGAGSWVGNQLEDYADGTRVEFMFK
Nucleotide
Download Length: 438 bp
>NTDB_id=965147 NST58_RS24775 WP_076302541.1 5523806..5524243(+) (nucA/comI) [Paenibacillus sp. FSL R10-2796]
TTGAAAGTAAAAAAATGGATCTCCAGTCTCATCATTGTTGCATTACTTGCTTTGGCTAGTTACTGGTTTGAACAAAACGG
AGAGCCTACAGACCCCTCGTCTCCATCCGATTCGAGTGTTGTTCAGCTAACCTTCCCATCAGACCGCTATCCTGAGACCG
CCAAACATATTCAGGATGCCATTGCGAAAGGTGAATCCGCCACATGTACGATTAACCGAGAGCAGGCTGAAGAGAACCGT
AAAGAGTCCTTAAAAGGGATCCCCACTAAAAAGGGGTATGACCGGGATGAATGGCCAATGGCTATGTGTAAGGAAGGCGG
CATTGGTGCCGACATTGAATACATAACGCCAAGCGATAACCGCGGGGCAGGAAGCTGGGTTGGCAATCAGCTGGAGGATT
ATGCAGACGGAACGCGGGTAGAATTTATGTTTAAATAA
TTGAAAGTAAAAAAATGGATCTCCAGTCTCATCATTGTTGCATTACTTGCTTTGGCTAGTTACTGGTTTGAACAAAACGG
AGAGCCTACAGACCCCTCGTCTCCATCCGATTCGAGTGTTGTTCAGCTAACCTTCCCATCAGACCGCTATCCTGAGACCG
CCAAACATATTCAGGATGCCATTGCGAAAGGTGAATCCGCCACATGTACGATTAACCGAGAGCAGGCTGAAGAGAACCGT
AAAGAGTCCTTAAAAGGGATCCCCACTAAAAAGGGGTATGACCGGGATGAATGGCCAATGGCTATGTGTAAGGAAGGCGG
CATTGGTGCCGACATTGAATACATAACGCCAAGCGATAACCGCGGGGCAGGAAGCTGGGTTGGCAATCAGCTGGAGGATT
ATGCAGACGGAACGCGGGTAGAATTTATGTTTAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| nucA/comI | Bacillus subtilis subsp. subtilis str. 168 |
69.903 |
71.034 |
0.497 |