Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ACJKIJ_RS27370 Genome accession   NZ_CP174500
Coordinates   5891804..5892400 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain HFL.SG.jS     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5886804..5897400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJKIJ_RS27350 (ACJKIJ_27350) aroK 5887935..5888453 (-) 519 WP_003095833.1 shikimate kinase AroK -
  ACJKIJ_RS27355 (ACJKIJ_27355) pilQ 5888465..5890609 (-) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  ACJKIJ_RS27360 (ACJKIJ_27360) comL/pilP 5890663..5891187 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  ACJKIJ_RS27365 (ACJKIJ_27365) pilO 5891184..5891807 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACJKIJ_RS27370 (ACJKIJ_27370) pilN 5891804..5892400 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  ACJKIJ_RS27375 (ACJKIJ_27375) pilM 5892400..5893464 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  ACJKIJ_RS27380 (ACJKIJ_27380) - 5893649..5896120 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=965116 ACJKIJ_RS27370 WP_003095839.1 5891804..5892400(-) (pilN) [Pseudomonas aeruginosa strain HFL.SG.jS]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=965116 ACJKIJ_RS27370 WP_003095839.1 5891804..5892400(-) (pilN) [Pseudomonas aeruginosa strain HFL.SG.jS]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369