Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   NSU05_RS14000 Genome accession   NZ_CP150177
Coordinates   2710186..2710932 (-) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus sp. EU52     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2705186..2715932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU05_RS13975 (NSU05_13975) mreC 2705592..2706464 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  NSU05_RS13980 (NSU05_13980) mreB 2706495..2707508 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  NSU05_RS13985 (NSU05_13985) radC 2707600..2708295 (-) 696 WP_003246034.1 DNA repair protein RadC -
  NSU05_RS13990 (NSU05_13990) - 2708332..2708901 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  NSU05_RS13995 (NSU05_13995) spoIIB 2709054..2710052 (-) 999 WP_038429403.1 stage II sporulation protein SpoIIB -
  NSU05_RS14000 (NSU05_14000) comC 2710186..2710932 (-) 747 WP_072592551.1 A24 family peptidase Machinery gene
  NSU05_RS14005 (NSU05_14005) - 2711072..2712364 (-) 1293 WP_038429404.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  NSU05_RS14010 (NSU05_14010) valS 2712424..2715066 (-) 2643 WP_038429405.1 valine--tRNA ligase -
  NSU05_RS14015 (NSU05_14015) - 2715514..2715705 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=965101 NSU05_RS14000 WP_072592551.1 2710186..2710932(-) (comC) [Bacillus sp. EU52]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=965101 NSU05_RS14000 WP_072592551.1 2710186..2710932(-) (comC) [Bacillus sp. EU52]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGAACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTTTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996

Multiple sequence alignment