Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NSU05_RS08525 Genome accession   NZ_CP150177
Coordinates   1633709..1634602 (+) Length   297 a.a.
NCBI ID   WP_038428949.1    Uniprot ID   -
Organism   Bacillus sp. EU52     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1628709..1639602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU05_RS08505 (NSU05_08505) - 1629379..1631109 (+) 1731 WP_038428947.1 hypothetical protein -
  NSU05_RS08510 (NSU05_08510) - 1631106..1631387 (+) 282 WP_003232001.1 FlhB-like flagellar biosynthesis protein -
  NSU05_RS08515 (NSU05_08515) sucC 1631560..1632717 (+) 1158 WP_003244732.1 ADP-forming succinate--CoA ligase subunit beta -
  NSU05_RS08520 (NSU05_08520) sucD 1632746..1633648 (+) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  NSU05_RS08525 (NSU05_08525) dprA 1633709..1634602 (+) 894 WP_038428949.1 DNA-processing protein DprA Machinery gene
  NSU05_RS08530 (NSU05_08530) topA 1634790..1636865 (+) 2076 WP_038428950.1 type I DNA topoisomerase -
  NSU05_RS08535 (NSU05_08535) trmFO 1636941..1638248 (+) 1308 WP_038428951.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NSU05_RS08540 (NSU05_08540) xerC 1638316..1639230 (+) 915 WP_003231988.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32921.24 Da        Isoelectric Point: 9.9142

>NTDB_id=965077 NSU05_RS08525 WP_038428949.1 1633709..1634602(+) (dprA) [Bacillus sp. EU52]
MDQAAACLTICRINQLLSPSLLLKWWKAEPSMSLTSPVLQTVTRDQIKAAALKNEIEQFYPKLPRVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=965077 NSU05_RS08525 WP_038428949.1 1633709..1634602(+) (dprA) [Bacillus sp. EU52]
TTGGATCAGGCCGCTGCCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGAGCCGTCTATGTCGCTGACATCACCCGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAATTTTATCCAAAGCTCCCGCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCCGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTGTTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

99.327

100

0.993
  dprA Legionella pneumophila strain ERS1305867

38.462

100

0.387

Multiple sequence alignment