Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   NSU05_RS06110 Genome accession   NZ_CP150177
Coordinates   1183123..1184274 (+) Length   383 a.a.
NCBI ID   WP_038428787.1    Uniprot ID   -
Organism   Bacillus sp. EU52     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 1178123..1189274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU05_RS06075 (NSU05_06075) - 1178794..1180011 (+) 1218 WP_010886478.1 MFS transporter -
  NSU05_RS06080 (NSU05_06080) - 1180176..1180754 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  NSU05_RS06085 (NSU05_06085) spx 1180935..1181330 (+) 396 WP_014476435.1 transcriptional regulator Spx -
  NSU05_RS06090 (NSU05_06090) - 1181373..1182029 (-) 657 WP_003232944.1 TerC family protein -
  NSU05_RS06095 (NSU05_06095) - 1182199..1182339 (+) 141 WP_119122854.1 hypothetical protein -
  NSU05_RS06100 (NSU05_06100) mecA 1182306..1182962 (+) 657 WP_003232942.1 adaptor protein MecA Regulator
  NSU05_RS06105 (NSU05_06105) - 1182957..1183079 (-) 123 WP_021479547.1 hypothetical protein -
  NSU05_RS06110 (NSU05_06110) coiA 1183123..1184274 (+) 1152 WP_038428787.1 competence protein CoiA Machinery gene
  NSU05_RS06115 (NSU05_06115) pepF 1184504..1186333 (+) 1830 WP_195757679.1 oligoendopeptidase F -
  NSU05_RS06120 (NSU05_06120) - 1186371..1186538 (-) 168 WP_003244944.1 hypothetical protein -
  NSU05_RS06125 (NSU05_06125) spxH 1186852..1187751 (-) 900 WP_024573348.1 protease adaptor protein SpxH -
  NSU05_RS06130 (NSU05_06130) - 1187748..1188146 (-) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  NSU05_RS06135 (NSU05_06135) cwlQ 1188401..1189135 (-) 735 WP_038428790.1 bifunctional muramidase/murein lytic transglycosylase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 44898.97 Da        Isoelectric Point: 9.9268

>NTDB_id=965070 NSU05_RS06110 WP_038428787.1 1183123..1184274(+) (coiA) [Bacillus sp. EU52]
MFSAVTEDGQMFHLLGAQQNQKLKRRRFFCPVCGGELAVKLGLQKAPHFAHKQNKSCSIDIEPESAYHLEGKRQLYVWLK
TQRASPILEPYIKTINQRPDVMARIKEHMVAVEYQCATIAPDVFQKRTEGFKQEGIIPQWIMGYSRLKRTASSFYQLSAF
HWQFINASPYRELICYCPERRSFLRLSHIIPFYTNHSYSSVQTIPIHRAGADDLFFTEPKPSIQYSGWTKAIHRFRHKPH
RFNSKETNRLRQMFYEKRQTSFSFLPTEVFVPVRKGAVFKSPVFVWQGFLYLFMTDLGDKRAPIRFSAVLQQCKLHIHKK
NIALRFECSEECLSEAVKQYIDFLCKKGFLRETQKEVYVLNQPAGGIHSMQDLIERDRSCFVE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=965070 NSU05_RS06110 WP_038428787.1 1183123..1184274(+) (coiA) [Bacillus sp. EU52]
TTGTTTAGTGCTGTGACTGAAGACGGCCAAATGTTTCACCTTCTAGGCGCTCAGCAAAACCAGAAATTAAAGCGGAGACG
GTTCTTCTGTCCGGTATGCGGGGGAGAGCTAGCTGTGAAGCTCGGACTTCAAAAAGCGCCGCATTTTGCCCATAAACAGA
ACAAGTCCTGCTCCATAGATATCGAACCGGAAAGCGCCTACCACTTAGAAGGAAAAAGACAGTTGTATGTATGGCTGAAA
ACGCAACGGGCTTCACCAATATTGGAGCCGTATATAAAGACAATCAACCAAAGACCAGACGTCATGGCAAGGATCAAGGA
GCATATGGTTGCTGTTGAATATCAATGCGCCACTATCGCTCCAGATGTCTTTCAAAAGCGGACAGAGGGCTTCAAACAAG
AAGGAATCATCCCGCAGTGGATTATGGGATACAGCCGCTTAAAACGGACTGCTTCGTCCTTTTATCAGCTTTCAGCTTTT
CATTGGCAGTTTATCAATGCAAGTCCATACAGAGAACTGATATGTTATTGTCCTGAAAGGCGTTCTTTTCTCCGACTCAG
CCACATCATTCCATTCTACACAAACCATTCTTATTCCTCAGTCCAAACGATCCCTATCCATCGGGCAGGTGCAGACGATC
TTTTTTTCACTGAACCGAAACCCTCAATTCAATATTCAGGCTGGACGAAAGCGATTCACCGTTTTCGCCATAAACCCCAT
CGGTTTAACTCTAAGGAAACAAATCGCCTTAGGCAGATGTTTTATGAGAAGCGGCAGACATCTTTTTCTTTTCTGCCGAC
TGAAGTGTTTGTTCCTGTTAGAAAAGGGGCAGTTTTTAAGAGTCCGGTTTTTGTGTGGCAGGGGTTTCTTTATTTGTTTA
TGACGGATCTTGGAGATAAACGTGCGCCAATTCGTTTTTCAGCCGTTTTGCAGCAGTGCAAACTGCACATTCATAAAAAG
AACATTGCACTCAGGTTCGAATGCAGCGAAGAGTGTCTTTCAGAAGCGGTTAAACAGTATATTGATTTTTTGTGCAAGAA
GGGATTTTTAAGGGAGACTCAGAAAGAAGTATATGTGCTGAATCAGCCTGCAGGCGGCATACATTCCATGCAGGATCTCA
TAGAAAGAGACCGCAGCTGTTTTGTAGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

96.783

97.389

0.943


Multiple sequence alignment