Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   NSU05_RS05985 Genome accession   NZ_CP150177
Coordinates   1159865..1160818 (+) Length   317 a.a.
NCBI ID   WP_032721344.1    Uniprot ID   -
Organism   Bacillus sp. EU52     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1154865..1165818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU05_RS05960 (NSU05_05960) argF 1156698..1157657 (+) 960 WP_038428782.1 ornithine carbamoyltransferase -
  NSU05_RS05965 (NSU05_05965) - 1157743..1157922 (+) 180 WP_003245356.1 YjzC family protein -
  NSU05_RS05970 (NSU05_05970) - 1157968..1158153 (-) 186 WP_029317607.1 DUF2929 domain-containing protein -
  NSU05_RS05975 (NSU05_05975) - 1158402..1159136 (+) 735 WP_032721340.1 hypothetical protein -
  NSU05_RS05980 (NSU05_05980) - 1159218..1159775 (+) 558 WP_038428783.1 hypothetical protein -
  NSU05_RS05985 (NSU05_05985) med 1159865..1160818 (+) 954 WP_032721344.1 transcriptional regulator Med Regulator
  NSU05_RS05990 (NSU05_05990) comZ 1160833..1161024 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  NSU05_RS05995 (NSU05_05995) yjzB 1161054..1161293 (-) 240 WP_003232972.1 spore coat protein YjzB -
  NSU05_RS06000 (NSU05_06000) fabH 1161458..1162396 (+) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  NSU05_RS06005 (NSU05_06005) fabF 1162419..1163660 (+) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  NSU05_RS06010 (NSU05_06010) - 1163736..1164521 (+) 786 WP_038428784.1 DUF2268 domain-containing protein -
  NSU05_RS06015 (NSU05_06015) appD 1164713..1165699 (+) 987 WP_003232965.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35323.84 Da        Isoelectric Point: 4.6031

>NTDB_id=965065 NSU05_RS05985 WP_032721344.1 1159865..1160818(+) (med) [Bacillus sp. EU52]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGNLEGGDHYYDLNTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=965065 NSU05_RS05985 WP_032721344.1 1159865..1160818(+) (med) [Bacillus sp. EU52]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACGAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATTGGCTACGTCACAGATCAATCGGATCTG
GGGGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CAACCTTGAGGGCGGCGATCATTACTACGACCTGAATACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGACA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

99.369

100

0.994

Multiple sequence alignment