Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   NSU16_RS13665 Genome accession   NZ_CP150176
Coordinates   2655977..2656723 (-) Length   248 a.a.
NCBI ID   WP_168748370.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1003     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2650977..2661723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU16_RS13640 (NSU16_13640) mreC 2651386..2652258 (-) 873 WP_010335163.1 rod shape-determining protein MreC -
  NSU16_RS13645 (NSU16_13645) mreB 2652289..2653302 (-) 1014 WP_010335164.1 cell shape-determining protein MreB -
  NSU16_RS13650 (NSU16_13650) radC 2653394..2654089 (-) 696 WP_326196290.1 DNA repair protein RadC -
  NSU16_RS13655 (NSU16_13655) - 2654126..2654695 (-) 570 WP_010335166.1 Maf family nucleotide pyrophosphatase -
  NSU16_RS13660 (NSU16_13660) - 2654846..2655844 (-) 999 WP_339191185.1 SPOR domain-containing protein -
  NSU16_RS13665 (NSU16_13665) comC 2655977..2656723 (-) 747 WP_168748370.1 A24 family peptidase Machinery gene
  NSU16_RS13670 (NSU16_13670) - 2656864..2658156 (-) 1293 WP_339191188.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  NSU16_RS13675 (NSU16_13675) valS 2658216..2660858 (-) 2643 WP_010335170.1 valine--tRNA ligase -
  NSU16_RS13680 (NSU16_13680) - 2661306..2661497 (+) 192 WP_010335171.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26587.25 Da        Isoelectric Point: 9.7432

>NTDB_id=965020 NSU16_RS13665 WP_168748370.1 2655977..2656723(-) (comC) [Bacillus sp. FSL K6-1003]
MIPILFVLGLILGSFYYTAGCRIPLHMSIINPRSACSFCRRTLTPAELIPVLSFALLKGRCKSCGQKLSLMYPAAELSTA
CLFAAAGFRFGLSWELIVALLFLSLLIIVSVTDIHFMLIPNRILLFFLPFLAAGRIISPLYSWYEGFIGAAAGFLLLAFI
AVITHGGIGGGDIKLLAVIGLVLGVKMLAAAFFFSVLIGALYGTAAVLFGRLGRKQPIPFAPAIAAGSIFAYLYGDSIIS
FYVKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=965020 NSU16_RS13665 WP_168748370.1 2655977..2656723(-) (comC) [Bacillus sp. FSL K6-1003]
ATGATTCCGATTCTTTTTGTCCTCGGCCTTATCCTCGGTTCATTTTATTACACGGCAGGATGCCGTATCCCCTTACACAT
GTCCATCATAAACCCTCGTTCGGCATGTTCTTTTTGCCGGAGAACCTTAACCCCGGCAGAATTAATCCCTGTTTTATCTT
TTGCTCTGCTAAAAGGCAGATGCAAAAGCTGCGGCCAAAAGCTCTCTCTTATGTATCCAGCGGCAGAGCTCTCGACAGCG
TGTTTATTTGCAGCCGCGGGATTTCGTTTTGGTTTGTCTTGGGAACTGATTGTTGCGTTGCTGTTTCTTTCTCTTCTTAT
CATTGTTTCTGTGACAGATATTCACTTTATGCTGATTCCAAATCGCATATTGCTATTCTTTCTTCCCTTTCTGGCGGCTG
GCAGAATCATTTCTCCGCTTTATTCATGGTATGAAGGCTTCATAGGTGCGGCTGCCGGTTTTCTTTTGCTGGCTTTTATT
GCCGTCATCACTCATGGAGGAATAGGGGGAGGGGATATTAAATTACTTGCCGTCATCGGCCTTGTGCTTGGTGTGAAAAT
GCTTGCTGCCGCGTTTTTCTTTTCCGTACTTATAGGAGCATTGTACGGAACTGCCGCTGTACTGTTCGGAAGGCTGGGCA
GAAAACAGCCAATTCCCTTTGCACCGGCAATTGCGGCAGGAAGCATTTTCGCTTATTTATACGGTGACTCTATCATTTCC
TTTTATGTCAAAATGGCGTTAGGGTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

80.645

100

0.806

Multiple sequence alignment