Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   NSU16_RS12515 Genome accession   NZ_CP150176
Coordinates   2454355..2455122 (-) Length   255 a.a.
NCBI ID   WP_339191030.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1003     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2449355..2460122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU16_RS12495 (NSU16_12495) - 2449528..2450340 (-) 813 WP_003237056.1 pyruvate, water dikinase regulatory protein -
  NSU16_RS12500 (NSU16_12500) ccpN 2450366..2451004 (-) 639 WP_024122084.1 transcriptional regulator CcpN -
  NSU16_RS12505 (NSU16_12505) glyS 2451139..2453178 (-) 2040 WP_339191027.1 glycine--tRNA ligase subunit beta -
  NSU16_RS12510 (NSU16_12510) glyQ 2453171..2454058 (-) 888 WP_010334976.1 glycine--tRNA ligase subunit alpha -
  NSU16_RS12515 (NSU16_12515) recO 2454355..2455122 (-) 768 WP_339191030.1 DNA repair protein RecO Machinery gene
  NSU16_RS12520 (NSU16_12520) - 2455159..2455302 (-) 144 WP_024122087.1 YqzL family protein -
  NSU16_RS12525 (NSU16_12525) era 2455446..2456351 (-) 906 WP_010334979.1 GTPase Era -
  NSU16_RS12530 (NSU16_12530) - 2456332..2456742 (-) 411 WP_010334980.1 cytidine deaminase -
  NSU16_RS12535 (NSU16_12535) - 2456863..2457234 (-) 372 WP_229146823.1 diacylglycerol kinase family protein -
  NSU16_RS12540 (NSU16_12540) ybeY 2457215..2457688 (-) 474 WP_229146821.1 rRNA maturation RNase YbeY -
  NSU16_RS12545 (NSU16_12545) pgpH 2457689..2459824 (-) 2136 WP_339191032.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29271.93 Da        Isoelectric Point: 8.0295

>NTDB_id=965012 NSU16_RS12515 WP_339191030.1 2454355..2455122(-) (recO) [Bacillus sp. FSL K6-1003]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLLQKTTGLGTLQQGEMILSMRG
IREDLFLTAYAAFIAELVDKGTEEKKPNPYLFEFILESFKQLDEGTDPDVITFIVQMKMLAVMGLYPELNHCVHCKSQDG
AFHFSVRDNGFICHRCFDKDPYKVPIKPQTARLLRLFYYFDLSRIGNVSLKQETKDEVKQVIDLYYEEYSGVYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=965012 NSU16_RS12515 WP_339191030.1 2454355..2455122(-) (recO) [Bacillus sp. FSL K6-1003]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGTACCAATGATTACGGAGAGACGAATAAAATAGTTACTTTACTGACAAG
AGAGCACGGAAAAATAGGTGTTATGGCCAGAGGAGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCATTCTTATTGCAGAAAACAACAGGCCTCGGAACCCTTCAGCAGGGTGAAATGATTCTCAGCATGAGAGGC
ATCAGAGAGGATTTGTTTTTAACTGCATATGCAGCTTTTATTGCCGAGCTTGTTGACAAAGGCACAGAAGAAAAAAAACC
AAATCCCTATTTGTTTGAATTTATTTTAGAATCCTTTAAACAGCTTGATGAAGGAACTGACCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTTGCTGTGATGGGACTGTATCCTGAGCTTAATCACTGTGTGCATTGTAAAAGCCAGGATGGG
GCATTCCATTTTTCTGTTCGCGATAACGGTTTTATTTGCCACCGCTGCTTTGACAAAGACCCTTACAAGGTGCCGATTAA
ACCGCAAACGGCAAGGCTATTGAGATTGTTTTATTACTTTGATCTTTCAAGGATTGGCAATGTGTCCTTAAAGCAGGAAA
CGAAAGATGAAGTAAAGCAAGTTATTGACTTGTACTACGAAGAATATTCAGGAGTTTATCTGAAATCGAAGCGCTTTTTA
GATCAAATGGAGAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

93.333

100

0.933

Multiple sequence alignment