Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   NSU16_RS10155 Genome accession   NZ_CP150176
Coordinates   2047855..2048985 (+) Length   376 a.a.
NCBI ID   WP_339190710.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1003     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2047855..2059660 2047855..2048985 within 0


Gene organization within MGE regions


Location: 2047855..2059660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU16_RS10155 (NSU16_10155) rapC 2047855..2048985 (+) 1131 WP_339190710.1 Rap family tetratricopeptide repeat protein Regulator
  NSU16_RS10160 (NSU16_10160) - 2048975..2049118 (+) 144 WP_162985138.1 hypothetical protein -
  NSU16_RS10165 (NSU16_10165) - 2049148..2050096 (-) 949 Protein_1947 UV damage repair protein UvrX -
  NSU16_RS10170 (NSU16_10170) ppsA 2050350..2052944 (-) 2595 WP_339190714.1 phosphoenolpyruvate synthase -
  NSU16_RS10175 (NSU16_10175) - 2053216..2053577 (-) 362 Protein_1949 hypothetical protein -
  NSU16_RS10180 (NSU16_10180) - 2053843..2053923 (+) 81 WP_229147581.1 putative holin-like toxin -
  NSU16_RS10185 (NSU16_10185) - 2054213..2054674 (-) 462 WP_268449763.1 YrhA family protein -
  NSU16_RS10190 (NSU16_10190) - 2054779..2055342 (-) 564 WP_339190716.1 SMI1/KNR4 family protein -
  NSU16_RS10195 (NSU16_10195) - 2055344..2057098 (-) 1755 WP_339190719.1 T7SS effector LXG polymorphic toxin -
  NSU16_RS10200 (NSU16_10200) - 2057198..2057755 (-) 558 WP_141556159.1 SMI1/KNR4 family protein -
  NSU16_RS10205 (NSU16_10205) - 2057823..2058077 (-) 255 WP_268505101.1 PH domain-containing protein -
  NSU16_RS10210 (NSU16_10210) - 2058299..2058829 (-) 531 WP_339190720.1 hypothetical protein -
  NSU16_RS10215 (NSU16_10215) - 2059394..2059660 (-) 267 WP_244956492.1 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44362.20 Da        Isoelectric Point: 6.4233

>NTDB_id=964999 NSU16_RS10155 WP_339190710.1 2047855..2048985(+) (rapC) [Bacillus sp. FSL K6-1003]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEKRPKIS
DLLEKIESSQTKRKGVLEYYCNFFRGMYEFDKKDYINAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKGQKTYTVRRIQCAFVVAGNFDDLESHEKAIPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKDIEKAFILYKKGIEKAQAIKDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTAFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=964999 NSU16_RS10155 WP_339190710.1 2047855..2048985(+) (rapC) [Bacillus sp. FSL K6-1003]
ATGGAGCAATTAATTCCGTCATCCACAGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCAGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGCTGTATTATT
CTCTCATGTGTTTTCGTCATCAGTTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAAAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATTGAAAGTAGCCAAACGAAACGTAAAGGTGTCCTGGAATACTACTGCAATTTCTTTAGAGGAAT
GTATGAATTTGATAAGAAGGATTATATAAATGCAATAAGATCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAATTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCAGAAGCAGCCCTTAACATTTATAAAGGCCAAAAAACTTATACTGTTCGCCGAATTCAATGTGCATTTGTTGTAGC
AGGGAACTTTGATGATTTGGAAAGTCATGAAAAAGCTATTCCACACCTTCAGAGAGCCTTGAAAGATTCGAAAGCTATAA
ACAAGCACAAACTAATTGGGGCATCATTATATAATTTGGGAAACTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAGGCAGTCTCATTGTACGAAAACGATAAAAGTGATCTTCTCCCTCACACGTTATTTACGCTTACACA
AATTTACTTTAAAATGAAAGATATTGAAAAAGCCTTTATTCTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATAAAAG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTTATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCGCCTTTTTTGACGTTATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(221-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

50.798

100

0.508
  rapF Bacillus subtilis subsp. subtilis str. 168

45.119

100

0.455

Multiple sequence alignment