Detailed information    

insolico Bioinformatically predicted

Overview


Name   abrB   Type   Regulator
Locus tag   NSU16_RS07825 Genome accession   NZ_CP150176
Coordinates   1506499..1506777 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus sp. FSL K6-1003     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context


Location: 1501499..1511777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU16_RS07805 (NSU16_07805) - 1502693..1503604 (+) 912 WP_339192475.1 ketopantoate reductase family protein -
  NSU16_RS07810 (NSU16_07810) - 1503632..1504864 (-) 1233 WP_010334090.1 aminopeptidase -
  NSU16_RS07815 (NSU16_07815) - 1504976..1505107 (-) 132 WP_010334091.1 protein YkpC -
  NSU16_RS07820 (NSU16_07820) mreBH 1505210..1506217 (-) 1008 WP_268451202.1 cell shape-determining protein MreBH -
  NSU16_RS07825 (NSU16_07825) abrB 1506499..1506777 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  NSU16_RS07830 (NSU16_07830) - 1506965..1508251 (+) 1287 WP_010334093.1 ATP-binding protein -
  NSU16_RS07835 (NSU16_07835) - 1508267..1509097 (+) 831 WP_168747682.1 gamma-glutamylcyclotransferase -
  NSU16_RS07840 (NSU16_07840) ktrC 1509169..1509834 (+) 666 WP_010334094.1 Ktr system potassium transporter KtrC -
  NSU16_RS07845 (NSU16_07845) ade 1509991..1511724 (+) 1734 WP_339192476.1 adenine deaminase -

Sequence


Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=964994 NSU16_RS07825 WP_003244728.1 1506499..1506777(+) (abrB) [Bacillus sp. FSL K6-1003]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=964994 NSU16_RS07825 WP_003244728.1 1506499..1506777(+) (abrB) [Bacillus sp. FSL K6-1003]
ATGAAATCAATAGGTGTTGTAAGAAAAGTAGATGAATTAGGCCGTATTGTTATGCCGATCGAGTTAAGACGGGCACTGGA
CATTGCTATTAAAGACAGCATTGAGTTTTTTGTCGACGGTGATAAAATTATTTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGGGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGTTAAGCCCTGAAGGTGCACAG
CTGCTTCTCGAAGAAATCCAAGCCGCTTTAAAAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576


Multiple sequence alignment